Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1440 ATGGCACCGTTTCCGCCAGAGAACGGCGTCGAAGGAGACGATGAGAGAGAAGAGGAAGACGAAGAAGAAGAAGAAGACGACGAAGAAGAAGTTGAAGATGAAGAAGATGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGAAGCATCCCTTCGCTGCTTGCGAGTGACGCCGCGTCGTGCATCGCCGTCGCGGAGCGGATGATCGCTCTCGGCACTCACGGCGGCACCGTTCACATCCTCGATTTTCTCGGGAATCAGGTTAAGGAATTCTCTGCACATGCTTCTGTTGTCAATGACCTTAGCTTTGACACAGAAGGTGAATATATTGGAAGTTGTTCCGATGATGGATCAGTTGTTATAAACAGCCTTTTCACTGATGAGAAATTGAAGTTTGAGTACCATCGGCCGATGAAGGCAGTGGCGTTGGATCCAGATTATGCAAGGAAAATGTCTAGGAGATTTGCTGGTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGAGATCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTATTACATTTATTGAAAAACCACGAGGGAGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTCTTGGTTATTGGCTGGGGAACATCTGTCAAAATTGCTTCAATTAGGACAAATCACCAAAAAGCAGCCAATGGGTCATTCAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATCGTGGCATCTTTTCAAACCAGCTATTTCATCTCAGGACTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTAGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGCAATGCACAGAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTGCCAGTACATGGGTTCGAGCATTACAGGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGGGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAGGATGTAGTTATTGCCAAACCAAGGGATACTGAAGATCATATTTCATGGCTTCTTCAGCATGGGTGGCATGAAAAAGCTTTGGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAACTACTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGAAAATACAGTGAAGCAGCATCTTTGTGTCCCAAGTTGCTTCGAGGATCAGCTTCAGCATGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACTGAAAACCCCAGACTACGTGATACTGCTTACGAGGTTGCTCTCGTTGCATTGGCTACAAATCCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGAATCACTTAAGGAGGCATTAGCAGAGTTGTATGTAATCGATGAGCAATATGAGAAAGCCTTCTTGTTGTATGCTGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAACCTACACGATGCAATTCGTGGAAAGGTTGTCCAACTAATGAGGCTAGACTGCAAGCGTGCAGTTCCTTTGTTAATCCAGAATAGGGACTTAATAAGTCCACCTGAAGTTGTGAAGCAACTTCTAAATGCGGATGATAAGAGTGATTGTAGATATTTTTTACATTTATATCTCCACTCATTATTTGAAGTAAATCCTCATGCTGGGAAAGACTTCCATGATATGCAGGTAGAACTCTATGCAGACTATGATCCTAAGATGCTGCTACCTTTTCTCCGTAGCAGTCAACACTACACCCTTGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCGAAACAAGCCCTAGCTGTTATTATTAACAAATTGGGGGATATAGAGGAGGCCGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTAATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTTGATCCCCTTTATATTGTAAATAAGGTTCCTAATGGGTTGGAAATACCTCGACTCCGGGATCGGCTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGAAATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTAATTAAGTATTACAAAGAGGCAAGGCATGGAATTTCTTTAGGTAATGAAGAAGATGAGCCGCGGGTTAAAATGAGTGATACTCGTGCTTCTCAGGTATTTGACAAATCTCCAAGTCTGAGAACTGTGGAGGTGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCGTTTTCTATACAGACTGTCTCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCATGGATTCATCTTACACTAGTAGTAACAAGAAAGAGGTCCAAGCCACGACCCTAGAGGCAGAAACGTATGATGATTACAATGGTTATGACGACGATGCTAGTGATGACGATGAAGAAGCCAAATCGGGTGGTCCTCGTATGCGTTGTATATTGTGTACTACTGCTGCTAGTTGA 2874 0.4353 MAPFPPENGVEGDDEREEEDEEEEEDDEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDTEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFAGGGLAGHLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRITFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHQKAANGSFRQVPLSGMTQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSTAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHISWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTESLKEALAELYVIDEQYEKAFLLYADLMKPEVFDFIDKHNLHDAIRGKVVQLMRLDCKRAVPLLIQNRDLISPPEVVKQLLNADDKSDCRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRNGCNDILKADCVNLLIKYYKEARHGISLGNEEDEPRVKMSDTRASQVFDKSPSLRTVEVKSKTRGGGRCCICFDPFSIQTVSVIVFFCCHGYHTTCLMDSSYTSSNKKEVQATTLEAETYDDYNGYDDDASDDDEEAKSGGPRMRCILCTTAAS* 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1440 957 PANTHER VACUOLAR PROTEIN SORTING VPS41 3 956 IPR045111 GO:0006623
Gso11g1440 957 SMART ring_2 872 952 IPR001841 -
Gso11g1440 957 Coils Coil 14 37 - -
Gso11g1440 957 SUPERFAMILY RING/U-box 866 909 - -
Gso11g1440 957 PIRSF Vps41 1 913 IPR016902 GO:0034058|GO:0046907
Gso11g1440 957 MobiDBLite consensus disorder prediction 924 944 - -
Gso11g1440 957 MobiDBLite consensus disorder prediction 1 43 - -
Gso11g1440 957 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 41 HOMOLOG 3 956 - -
Gso11g1440 957 Gene3D Tetratricopeptide repeat domain 605 821 IPR011990 GO:0005515
Gso11g1440 957 Gene3D - 9 282 IPR015943 GO:0005515
Gso11g1440 957 SUPERFAMILY WD40 repeat-like 57 250 IPR036322 GO:0005515
Gso11g1440 957 MobiDBLite consensus disorder prediction 924 938 - -
Gso11g1440 957 Pfam Region in Clathrin and VPS 611 754 IPR000547 GO:0006886|GO:0016192
Gso11g1440 957 SMART CLH_2 611 758 IPR000547 GO:0006886|GO:0016192
Gso11g1440 957 MobiDBLite consensus disorder prediction 11 38 - -
Gso11g1440 957 SMART WD40_4 85 124 IPR001680 GO:0005515
Gso11g1440 957 SMART WD40_4 173 209 IPR001680 GO:0005515
Gso11g1440 957 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 611 758 IPR000547 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1440 Gso-Chr11 16663595 16674085 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1440 K20184 - gmx:100804340 1847.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1440 11 16663595 16674085 Gso11g1440 11 16663595 16674085 ECH
Gso12g0677 12 6643155 6660079 Gso11g1440 11 16663595 16674085 GST