Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0664 ATGGCGTCAGCATTATCTTCTCTCTCTTCCACGTCTTCTTCACTGTTGCAGCACAGTTTCACCGGTAACTCGAAGGCTCCTATTACTCAATTCCCCAACAAAAGTGCGCGCTTTTCGGTCTTCGCTCAAAAGAAGGCAAAGAAACTTCGGAAGATAATTTTGAAGGAAGATGTGACTGATGTAGGAAAGCAAGGGCAACTTCTTGATGTGAGGGCTGGCTTTTTCAGAAATTACCTGCTTCCCATGGGAAAGGCACAACTTGTTACTCCCCAGCTACTCAAGGAAATGAAGATAGAAGAGGAAAGAATTGAGGCTGAGAAAAGACGGGTAAAAGAAGAGGCACAACAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGTGTAACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAGGGAGGTGGACAAGAGAATTGTTGATCTTCCAGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAGCTTCACCCAGAAGTTACAGCTAGAGTGAGGGTGAATGTTTTTGCTAACTAA 594 0.4242 MASALSSLSSTSSSLLQHSFTGNSKAPITQFPNKSARFSVFAQKKAKKLRKIILKEDVTDVGKQGQLLDVRAGFFRNYLLPMGKAQLVTPQLLKEMKIEEERIEAEKRRVKEEAQQLALIFETVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVDLPEIRETGEYIAELKLHPEVTARVRVNVFAN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0664 197 Gene3D - 51 109 IPR036935 -
Gso12g0664 197 ProSitePatterns Ribosomal protein L9 signature. 62 89 IPR020070 -
Gso12g0664 197 SUPERFAMILY Ribosomal protein L9 C-domain 109 196 IPR036791 -
Gso12g0664 197 Hamap 50S ribosomal protein L9 [rplI]. 50 197 IPR020594 GO:0003735|GO:0005840|GO:0006412
Gso12g0664 197 TIGRFAM L9: ribosomal protein bL9 51 196 IPR020594 GO:0003735|GO:0005840|GO:0006412
Gso12g0664 197 Gene3D - 110 197 IPR036791 -
Gso12g0664 197 Pfam Ribosomal protein L9, C-terminal domain 112 195 IPR020069 -
Gso12g0664 197 PANTHER 50S RIBOSOMAL PROTEIN L9 1 197 IPR000244 GO:0003735|GO:0005840|GO:0006412
Gso12g0664 197 PANTHER 50S RIBOSOMAL PROTEIN L9, CHLOROPLASTIC 1 197 - -
Gso12g0664 197 Coils Coil 93 120 - -
Gso12g0664 197 Pfam Ribosomal protein L9, N-terminal domain 51 96 IPR020070 -
Gso12g0664 197 SUPERFAMILY L9 N-domain-like 51 106 IPR009027 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0664 Gso-Chr12 6485424 6488658 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0664 K02939 - gmx:100500390 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0664 12 6485424 6488658 Gso11g1452 11 16844009 16847261 GST