Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0614 ATGGACACACCAAATGCACAGCCGCAAGCTGCATCAGCAAGCACGCCAAGGAAAAAAATGACAAAGCAATTGACAGGTAAAAGGGATGATACACCTTTGCACTCTGCAGCAAGAGCAGGGAATATGACTGTTCTGAAAGACACGGTTGGTGGCACTGAAGAGGGTGAACTACGTGTGTTGCTGACAAAGCAGAACCATGCCGGAGAAACGGTTCTTTATGTTGCTGCTGAATATGGTTATGTTGATATGGTTAGGGAGCTGATTCAATATTATGATCTTGCTGGGGCGGGAATTAAGGCCAGGAATGGGTTTGATGCACTCCACATTGCTGCCAAACAAGGGGATTTAGATATTGTGAAGATCTTAATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCAGTGCACACCGCTGCATTACAAGGGCATACTGAGATAGTGAAGCTTCTATTGGAAGCAGGTAGTAATCTGGCAACCATATCTAGAAGTAATGGGAAAACAGCTTTGCATTCTGCTGCGAGAAATGGACATTTGGAGGTTGTGAAAGCGCTTCTGGGGAAGGAGCCTTCAGTTGCAACACGGACTGATAAGAAGGGACAAACAGCAATTCACATGGCAGTGAAGGGACAGAGTCTTGAGGTGGTGGAGGAGTTGATAAAAGCTGATCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACAGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCGGATTGTTAAGTTGCTTCTTGGGCAGACAGAAACCGATGCCTTGGTAGTTAACAGATCCGGCGAAACTGCACTAGACACAGCTGAGAAAACTGGTAACTCTGAAGTTAAAGACATTCTCCTGGAACATGGTGTCCGAAGAGCCAAAGCCATAAAGGCTCAACCAGGAACAGCCACAGCCCGAGAGTTGAAACAGACTGTGAGTGACATAAAGCATGAAGTCCACTACCAGTTGGAACACACGCGCCAAACTCGAAGAGGTGTTCAAGGCATTGCCAAACGCATCAACAAAATGCATACTGAAGGACTCAACAATGCAATAAACTCCACAACTGTGGTTGCAGTCCTCATTGCCACAGTTGCCTTTGCAGCAATCTTCACAGTCCCCGGCCAATTTGCTGATGAACCAAAAGACATCCCTGCAGGTTCAGGAATGACCATTGGTGAAGCAAACATAGCCCCACAAGCTGCATTTCTCATTTTCTTCGTCTTTGATTCCATCGCCCTCTTCATTTCTCTGGCCGTGGTGGTGGTGCAAACCTCGGTTGTGATCATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATTAACAAGCTAATGTGGTTGGCTTGTGTGCTTATTTCTGTGGCCTTCTTGGCACTGTCATTTGTAGTGGTGGGGAAGGATCAGAAGTGGCTTGCAATTGGAGTCACTATCATAGGGACAACTATAATGGCCACAACTTTGGGCACCATGAGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAACTTAAGGAGCATTCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTATCAGTTATGTCAGATTCTGAGCTACTAAACAATGACCGCAAGATATTGTATGCCATATAG 1647 0.4596 MDTPNAQPQAASASTPRKKMTKQLTGKRDDTPLHSAARAGNMTVLKDTVGGTEEGELRVLLTKQNHAGETVLYVAAEYGYVDMVRELIQYYDLAGAGIKARNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATISRSNGKTALHSAARNGHLEVVKALLGKEPSVATRTDKKGQTAIHMAVKGQSLEVVEELIKADPSTINMVDNKGNTALHIATRKGRARIVKLLLGQTETDALVVNRSGETALDTAEKTGNSEVKDILLEHGVRRAKAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADEPKDIPAGSGMTIGEANIAPQAAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNDRKILYAI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0614 548 MobiDBLite consensus disorder prediction 1 40 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat profile. 136 168 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 67 96 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 238 268 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 28 59 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 170 199 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 102 131 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 136 165 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 204 234 IPR002110 GO:0005515
Gso12g0614 548 SMART ANK_2a 272 301 IPR002110 GO:0005515
Gso12g0614 548 Gene3D - 5 166 IPR036770 -
Gso12g0614 548 MobiDBLite consensus disorder prediction 1 20 - -
Gso12g0614 548 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 7 548 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat region circular profile. 136 163 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat region circular profile. 238 259 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat region circular profile. 102 124 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat profile. 102 134 IPR002110 GO:0005515
Gso12g0614 548 ProSiteProfiles Ankyrin repeat profile. 238 259 IPR002110 GO:0005515
Gso12g0614 548 PANTHER ANKYRIN REPEAT PLANT PROTEIN 7 548 - -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat region circular profile. 170 191 - -
Gso12g0614 548 Pfam Domain of unknown function 353 471 IPR026961 -
Gso12g0614 548 SUPERFAMILY Ankyrin repeat 32 297 IPR036770 -
Gso12g0614 548 Pfam Ankyrin repeats (3 copies) 19 90 IPR002110 GO:0005515
Gso12g0614 548 Pfam Ankyrin repeats (3 copies) 96 163 IPR002110 GO:0005515
Gso12g0614 548 Pfam Ankyrin repeats (3 copies) 167 229 IPR002110 GO:0005515
Gso12g0614 548 Pfam Ankyrin repeats (3 copies) 233 297 IPR002110 GO:0005515
Gso12g0614 548 Gene3D - 167 339 IPR036770 -
Gso12g0614 548 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0614 Gso-Chr12 5692540 5697172 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0614 11 548 Miscellaneous Gene Families AT1G07710 70.818 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0614 - - gmx:100808971 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0614 12 5692540 5697172 Gso11g1227 11 11146989 11151514 GST