Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1227 ATGGACACACCAAATGCACAGCCACAAGCTGCATCAGCAAGCACGCCAAGGACGCCAAGGAAAAAAATGACTAAGCAATTGACAGGTAAAAGGGATGATACACCTTTGCACTCTGCATCAAGAGCAGGGAATATGAGTGTTCTGAAAGACACGGTTAGTGGTAGTGAAGAGGGTGAATTGCGTGTGTTGTTGACAAAGCAGAACCATGCCGGAGAAACGATTCTTTTTGTTGCTGCTGAATATGGTTATGTTGAAATGGTTAGGGAGCTGATTCAATATTATGATCCTGCTGGTGCTGGAATTAAGGCCAGTAATGGTTTTGATGCACTTCACATTGCTGCCAAGCAAGGGGATTTAGATATTGTGAAGATCCTGATGGAGGCTCATCCTGAATTGTCAATGACTGTGGATCCATCCAACACCACAGCAGTGCACACTGCTGCATTACAAGGGCATACTGAGATAGTAAAGCTTCTATTGGAAGCAGGTAGTAATCTGGCAACCATTGCTAGAAGTAATGGGAAAACAGCTTTGCATTCTGCTGCGAGAAATGGACATTTGGAGGTTGTGAAAGCGCTATTGGGGAAGGAGCCTGTGGTTGCAACGCGGACAGATAAGAAGGGACAGACAGCACTTCACATGGCAGTGAAGGGACAGAGTCTTGAGGTGGTGGAGGAGTTGATAAAAGCTGATCCCTCAACAATAAACATGGTTGATAATAAGGGTAACACAGCATTGCATATAGCAACCAGGAAGGGCAGGGCTCAGATTATTAAGTTGCTTCTTGGGCAGACAGAAACCAATGGCTTGGTAGTTAACAAATCTGGCGAAACTGCACTAGACACAGCTGAGAAAACTGGGAATTCTGAAATTAAAGACATTCTCCTTGAACACGGTGTTCGAAGCGCCAAAGCCATAAAGGCTCAACCAGGAACAGCTACAGCCCGAGAGTTGAAACAAACTGTGAGTGACATAAAGCATGAAGTCCACTACCAGTTGGAACACACACGCCAAACTCGAAGAGGTGTTCAAGGCATAGCCAAGCGCATCAACAAAATGCATGCTGAAGGACTCAACAATGCAATAAACTCCACAACTGTGGTTGCAGTCCTCATTGCCACAGTTGCCTTTGCAGCCATCTTCACAGTCCCTGGCCAATTTGCTGATGATCCAAAAGTCCTCCCTGCAGGAATGACCATTGGTGAAGCAAACATAGCACCGCAAGCTGCATTTCTCATTTTCTTCGTCTTTGATTCCATCGCGCTCTTCATTTCTCTGGCCGTCGTGGTGGTGCAAACCTCAGTCGTGATCATAGAAAGCAAAGCAAAGAAGCAGATGATGGCCATCATTAACAAACTAATGTGGTTGGCTTGTGTGCTTATCTCTGTGGCCTTCTTGGCACTGTCATTTGTAGTGGTGGGGAAGGACCAGAAGTGGCTTGCAATTGGAGTCACAATCATAGGGACAACTATAATGGCCACAACTTTGGGCACCATGAGTTACTGGGTCATTAGGCATCGCATTGAGGCCTCAAACTTAAGGAGCATTCGGAAATCTTCAATGGGAAGCAGGTCAAGGTCTTTTTCAGTGTCTGTTATGTCAGATTCTGAGCTACTAAACAATGAGCGTAAGATATTGTATGCGATATAG 1650 0.4545 MDTPNAQPQAASASTPRTPRKKMTKQLTGKRDDTPLHSASRAGNMSVLKDTVSGSEEGELRVLLTKQNHAGETILFVAAEYGYVEMVRELIQYYDPAGAGIKASNGFDALHIAAKQGDLDIVKILMEAHPELSMTVDPSNTTAVHTAALQGHTEIVKLLLEAGSNLATIARSNGKTALHSAARNGHLEVVKALLGKEPVVATRTDKKGQTALHMAVKGQSLEVVEELIKADPSTINMVDNKGNTALHIATRKGRAQIIKLLLGQTETNGLVVNKSGETALDTAEKTGNSEIKDILLEHGVRSAKAIKAQPGTATARELKQTVSDIKHEVHYQLEHTRQTRRGVQGIAKRINKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFADDPKVLPAGMTIGEANIAPQAAFLIFFVFDSIALFISLAVVVVQTSVVIIESKAKKQMMAIINKLMWLACVLISVAFLALSFVVVGKDQKWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASNLRSIRKSSMGSRSRSFSVSVMSDSELLNNERKILYAI* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1227 549 ProSiteProfiles Ankyrin repeat region circular profile. 241 262 - -
Gso11g1227 549 SMART ANK_2a 241 274 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 275 305 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 31 62 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 207 237 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 139 168 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 173 202 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 70 99 IPR002110 GO:0005515
Gso11g1227 549 SMART ANK_2a 105 134 IPR002110 GO:0005515
Gso11g1227 549 MobiDBLite consensus disorder prediction 1 52 - -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515
Gso11g1227 549 SUPERFAMILY Ankyrin repeat 35 300 IPR036770 -
Gso11g1227 549 PANTHER ANKYRIN REPEAT PLANT PROTEIN 10 549 - -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat profile. 241 262 IPR002110 GO:0005515
Gso11g1227 549 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 549 - -
Gso11g1227 549 Gene3D - 170 348 IPR036770 -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat profile. 173 205 IPR002110 GO:0005515
Gso11g1227 549 Pfam Ankyrin repeats (3 copies) 173 232 IPR002110 GO:0005515
Gso11g1227 549 Pfam Ankyrin repeats (3 copies) 239 300 IPR002110 GO:0005515
Gso11g1227 549 Pfam Ankyrin repeats (3 copies) 101 166 IPR002110 GO:0005515
Gso11g1227 549 ProSiteProfiles Ankyrin repeat region circular profile. 207 229 - -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat region circular profile. 105 127 - -
Gso11g1227 549 Gene3D - 7 169 IPR036770 -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat region circular profile. 173 194 - -
Gso11g1227 549 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g1227 549 Pfam Domain of unknown function 356 472 IPR026961 -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat region circular profile. 139 166 - -
Gso11g1227 549 ProSiteProfiles Ankyrin repeat profile. 207 229 IPR002110 GO:0005515
Gso11g1227 549 ProSiteProfiles Ankyrin repeat profile. 105 137 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1227 Gso-Chr11 11146989 11151514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1227 19 549 Miscellaneous Gene Families AT1G07710 70.810 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1227 - - gmx:100809687 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1227 11 11146989 11151514 Gso11g1227 11 11146989 11151514 ECH
Gso12g0614 12 5692540 5697172 Gso11g1227 11 11146989 11151514 GST