Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0613 ATGGATGACGAATTGCTCGAGCTGCAGCGAGAATTCGAGTTCGCACAGCAAGCCAAGTCCAGCATTCGATTATCGGAGCGAAACGTCGTCGAATTGGTCCAAAAACTGCAGCAACTCCAATTCATCGATTTCGAGCTTCTGCACACTGTCTCCGGCAAAGAATATATCACTCTCCTGAGGAACGAGATGGTGGCGGAGGTGAAGAAATTAGGGCGCATTTCTTTGATCGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGGAGAAACAGGCTCAGAGCGTTGTAACAGAACACGGAGAACTGATGTTGACTCAGGGAGAAATTATGTCGGAGTCTTATTGGGACTCGATTGCAGAAGAGATTAACGAGAGGCTTCAGGAATGTAGTCAGATTGCTCTGACCGAACTCGCCGCGCAATTGAACGTAGGTTTGGACTTGGTTTCCTCCGTGTTGGAGCCGCGCCTTGGAACAATTGTGAAAGGAAGGCTTGAAGGTGGACAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGGGGCATCACCGTTCCCACGAATTTGACTGTGGTATGGAGCTCATTGCAGCAGTTGCTGCAAGAAATTGATGGAACCAGTGGTTTGGCTGTTGAAGGATCTTTCTTCCAGTCTTTGTTTAATGGACTTGTGAAGGAAGGCAAGGTTCTAGGGTCGCTTCGTGCAGGAGTACACTGGACGCCCGCTGTATTTGCTGTAGCTCAAAGGGAGTTTGTGGACTCATTCTTTTCTCAGAATTCTTTTATCACATATGAAGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGTCCAGATATCCTGAAGGCAAGCCGCTAGTTACAACATTTGTTCATTCCTCGATGATTGAGATGGTAGATGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCTAAAATGTTGTCCCTATGTCAATCTATTCAAAATGCTGTTAAGTCTAACAAAGCACATATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGGACATCTGTGATCGTGTTGTGCGAGAATTGGAGACATTAGGTGTTTCAGGGTCTGCTGGTGACTTTCAAGTATCCAACGAAGCAAAATTAGGGCATGAGTCAAGCAGGTTGAATGACTCCAATGAGATGGCGAGTGATGGTGGTGCCAACAGGCTTGCTGATAAAGGATCAAAGAAAAAAAAGGGGAAAGCCACTGGGAATACAGTAGCAAATCTATCTGAAAGTGCTGCAGATAACCAGGAACAGACTTTGACAAAATCTAAGAGAGGCCAGAAAAGAGGTAAGGATACATCTTCACAGACGTCAGATTCAAAGACAGGTTCTAGGAAAGAATTGCTTAAAATGAAAGAGGATAATCCCGGTCCCTCAGAAGAATGGATCATGCAGAAAATTACAGCATTAGTTTCCGATTTTGAAGAACAAGGTATAGATGACCCTGAAACAATTCTAAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAGTTCTTGGATGGAGAAAAAGAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACGTTTGCTTGATAATTTGCAAAAGAAACTTGATGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGGACGGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTGGATGAGCACAACAAATTAAAGAATGGACATGACGAGCAGGAAGCTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGTCATTTTTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAGGGAAAGAGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGTAAGGAGTTGACAGCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTTCCAAAAGTTGTGTCTTTACTTTATATCCAGGTTTACCACAAAGCACTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATTTCCCATTTAAAGGATAAGCTAGACGAGTCAGCATGCAAGATTTTAACTGATTATCAAACTGCCACAGTGACTCTTTTGACATTATTAGCAGCTTCACCCGGTGATGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTAGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTTCGTAA 2439 0.4334 MDDELLELQREFEFAQQAKSSIRLSERNVVELVQKLQQLQFIDFELLHTVSGKEYITLLRNEMVAEVKKLGRISLIDLADATGVDLYYVEKQAQSVVTEHGELMLTQGEIMSESYWDSIAEEINERLQECSQIALTELAAQLNVGLDLVSSVLEPRLGTIVKGRLEGGQLYTPAYVARVGAMVRGAVRGITVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGKVLGSLRAGVHWTPAVFAVAQREFVDSFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVTTFVHSSMIEMVDASTEDALDRGSWSDSLSLLPSSFTPQDASKMLSLCQSIQNAVKSNKAHIFGDFYVLSSSFIKDICDRVVRELETLGVSGSAGDFQVSNEAKLGHESSRLNDSNEMASDGGANRLADKGSKKKKGKATGNTVANLSESAADNQEQTLTKSKRGQKRGKDTSSQTSDSKTGSRKELLKMKEDNPGPSEEWIMQKITALVSDFEEQGIDDPETILRPLANQLRPTIISSWMEKKKALLTNNAERMKRLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDMLLQNLDEHNKLKNGHDEQEAPNSESVSLSPGDRTVIFKSFPGALANKALAVVEALEGKSVEIFMAAFRMVTEESGLPLKKLDKKLERTLLHSYRKELTAQVSAETDPVSLLPKVVSLLYIQVYHKALQAPGRAISVAISHLKDKLDESACKILTDYQTATVTLLTLLAASPGDEEDCASDRILSKKELLESQMLDLKSLVLSTSQSS* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0613 812 MobiDBLite consensus disorder prediction 402 417 - -
Gso12g0613 812 MobiDBLite consensus disorder prediction 457 471 - -
Gso12g0613 812 Coils Coil 542 576 - -
Gso12g0613 812 Pfam E3 UFM1-protein ligase 1 4 286 IPR018611 GO:0061666|GO:0071569
Gso12g0613 812 MobiDBLite consensus disorder prediction 402 496 - -
Gso12g0613 812 MobiDBLite consensus disorder prediction 436 456 - -
Gso12g0613 812 PANTHER E3 UFM1-PROTEIN LIGASE 1 1 810 IPR018611 GO:0061666|GO:0071569
Gso12g0613 812 MobiDBLite consensus disorder prediction 479 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0613 Gso-Chr12 5680664 5689182 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0613 1 778 EF-hand Containing Proteins AT3G46220 62.532 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0613 K22755 - gmx:100808087 1482.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0613 12 5680664 5689182 Gso11g1228 11 11153465 11162250 GST