Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1228 ATGGATGACGAATTGCTCGAGCTGCAGCGACAATTCGAGTTCGCGCAGCAAGCCAAGTCCAGCATTCGCTTATCGGAGCGAAACGTCGTCGAATTGGTCCAAAAACTGCAGCAACTCCAAATCATCGATTTCGAGCTTCTGCACACTGTCTCCGGCAAAGAATACATCACTCTCGATCAACTGAGGAACGAGATGGTGTCGGAGGTGAAGAAAATAGGGCGCGTTTCTTTGATCGATCTCGCTGACGCTACTGGAGTTGACTTGTACTACGTGGAGAAGCAGGCTCAGAGCGTTGTAACGGAACACCGAGAACTGATGTTGACTCAGGGAGAAATTATGTCGGAGTCTTATTGGGACTCAATTGCAGAAGAGATTAACGAGAGGCTTCAGGAATGTAGTCAAATTGCGCTGACGGAACTCGCGGCGCAATTGAACGTAGGTTTGGACTTGGTTTCCACCATGTTGGAGCCGCGCCTTGGAACAATTGTGAAAGGAAGGCTTGAAGGCGGGCAGTTGTATACTCCTGCCTATGTGGCTCGTGTTGGTGCCATGGTTCGTGGTGCTGTGCGAGGCATCACCGTTCCCACAAATTTGACTGTGGTATGGAGCTCATTGCAGCAGTTGCTGCAAGAAATTGATGGAACCAGTGGTTTGGCTGTTGAAGGATCTTTCTTCCAGTCTTTGTTTAATGGACTTGTGAAGGAAGGCAAGATTCTTGGGTTGCTCCGCGCAGGAGTACACTGGACACCAGCTGTGTTTGCTGTTGCTCAAAGGGAGTTTGTGGATTCATTCTTTTCTCAGAATTCTTTTATCACATATGAGGCGCTGCACAAACTTGGAATTCCCCAGCCCATTCAATTCTTGCAGTCCAGATATCCTGAAGGCAAACCTCTAGTTTCAACATTTGTTCATCCATCTATGATTGAGATGCTAGACGCTTCTACTGAGGATGCTCTTGACCGTGGTAGCTGGAGTGATTCTCTTTCCTTATTGCCTTCATCATTTACACCCCAAGATGCATCTAAAATGTTGTCCCTATGTCAATCTGTTCAAAATGCTCTTAAGTCTAACAAAGCACATATTTTTGGGGATTTTTATGTGTTGAGCAGCAGCTTTATAAAGGACATCTGTGATCGGGTTGTGAAAGAATTGGAGACATTAGGTGTTTCAGGGTGTGCTGACAGTACAATGCATGCTGATGTTCAAGTACCCAATGAAGCAAAAGTAGGGCATGAGTCAGGCAGGTTGAATGAGATGGTGAGTGATGGTGGTGCCAACAGGCATGCTGATAAAGGATCAAAGAAAAAAAAGGGAAAAGCCACTGGGAATGCAGTAGCAAATCTATCTGAAAGCGGTGCAGATAACCAGGAACAGACTTTGACAAAATCTAAGAGAGGCCAGAAAAGAGGTAAGGATGCATCTTCACAAACGTCAGATTCAAAGACAGGTTCTAAGAAAGAATCGCTTAAAGTGAAAGAGGATAATCCCAGTCCCTCAGAAGATTGGATCATGCAGAAAATTACAGCATTGGTTTCCGATTTTGAAGAACAAGGTATAGATGATCCTGAAACAATTCTTAGGCCTTTGGCTAACCAATTAAGGCCTACAATAATCAGTTCTTGGATGGAGAAAAAGAAGGCATTGCTTACAAACAATGCAGAAAGAATGAAACGTTTGCTTGATAATTTGCAGAAGAAACTTGATGAGTCTTTCTTAAACATGCAGCTGTATGAAAAAGCCTTAGAACTGTTTGAAGATGATCAATCAACTTCTGTTGTTTTGCATAGGCATTTACTAAGGACAGTAGCAGCTCCTATGGTGGATATGCTTCTTCAAAACCTGGATGAGCACAACAAATTAAAGAATGGACATGAGGTGCAGGAAGCTCCAAATTCTGAATCTGTTTCACTTAGTCCTGGAGACAGAACTGCCATTTGTAAGAGTTTTCCAGGAGCTCTTGCAAATAAGGCTCTTGCTGTTGTAGAAGCATTGGAAGGAAAGAGTGTGGAGATATTCATGGCTGCTTTTAGAATGGTAACAGAAGAGAGTGGGTTGCCTTTGAAAAAGCTTGACAAGAAACTAGAAAGAACACTTTTACATTCATATCGCAAGGAGTTGACATCTCAAGTTTCTGCTGAGACTGACCCTGTATCGCTTCTGCCAAAAGTTGTGTCTTTACTTTATATCCAGGTTTACCACAAAGCTCTTCAAGCTCCTGGAAGGGCCATTTCTGTTGCTATTTCCCATTTAAAGGATAAGCTAGGCGAGTCAGCATGCAAGATTTTAACTGATTATCAAACTGCCACAGTGACTCTTTTGACACTATTAGCAGCTTCACCTGGTGATGAAGAGGATTGTGCATCTGATAGGATTTTGAGTAAAAAGGAGCTTCTTGAGAGCCAAATGCTGGACCTCAAAAGCTTGGTTTTGAGCACCTCCCAATCTTCATAA 2451 0.4345 MDDELLELQRQFEFAQQAKSSIRLSERNVVELVQKLQQLQIIDFELLHTVSGKEYITLDQLRNEMVSEVKKIGRVSLIDLADATGVDLYYVEKQAQSVVTEHRELMLTQGEIMSESYWDSIAEEINERLQECSQIALTELAAQLNVGLDLVSTMLEPRLGTIVKGRLEGGQLYTPAYVARVGAMVRGAVRGITVPTNLTVVWSSLQQLLQEIDGTSGLAVEGSFFQSLFNGLVKEGKILGLLRAGVHWTPAVFAVAQREFVDSFFSQNSFITYEALHKLGIPQPIQFLQSRYPEGKPLVSTFVHPSMIEMLDASTEDALDRGSWSDSLSLLPSSFTPQDASKMLSLCQSVQNALKSNKAHIFGDFYVLSSSFIKDICDRVVKELETLGVSGCADSTMHADVQVPNEAKVGHESGRLNEMVSDGGANRHADKGSKKKKGKATGNAVANLSESGADNQEQTLTKSKRGQKRGKDASSQTSDSKTGSKKESLKVKEDNPSPSEDWIMQKITALVSDFEEQGIDDPETILRPLANQLRPTIISSWMEKKKALLTNNAERMKRLLDNLQKKLDESFLNMQLYEKALELFEDDQSTSVVLHRHLLRTVAAPMVDMLLQNLDEHNKLKNGHEVQEAPNSESVSLSPGDRTAICKSFPGALANKALAVVEALEGKSVEIFMAAFRMVTEESGLPLKKLDKKLERTLLHSYRKELTSQVSAETDPVSLLPKVVSLLYIQVYHKALQAPGRAISVAISHLKDKLGESACKILTDYQTATVTLLTLLAASPGDEEDCASDRILSKKELLESQMLDLKSLVLSTSQSS* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1228 816 MobiDBLite consensus disorder prediction 444 460 - -
Gso11g1228 816 MobiDBLite consensus disorder prediction 461 475 - -
Gso11g1228 816 PANTHER E3 UFM1-PROTEIN LIGASE 1 1 814 IPR018611 GO:0061666|GO:0071569
Gso11g1228 816 Coils Coil 546 580 - -
Gso11g1228 816 Pfam E3 UFM1-protein ligase 1 4 288 IPR018611 GO:0061666|GO:0071569
Gso11g1228 816 MobiDBLite consensus disorder prediction 404 501 - -
Gso11g1228 816 MobiDBLite consensus disorder prediction 483 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1228 Gso-Chr11 11153465 11162250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1228 1 782 EF-hand Containing Proteins AT3G46220 62.628 0.0 952
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1228 K22755 - gmx:100810221 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1228 11 11153465 11162250 Gso11g1228 11 11153465 11162250 ECH
Gso12g0613 12 5680664 5689182 Gso11g1228 11 11153465 11162250 GST