Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso12g0595 | ATGGCTGCGTCGCGAATCGTGGCCCATCCTCCGCCCTATCTCCACCGTCAATCTCCGCCATCAGACGCCGCGCCTTCCCTCAACCTCACACTCCTCCCAAAACGGTACCGTAACCTCGGCATTTGCGCTTCCCTTCGCGGCGATAAGCCCCACTCCGTCGAACTGCGAGCCACCACCTCCGACGTCGTCGTTTCCCGAGATCTTCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCAGTTTCCGATGGCTCTTGCCTTCGTGTTGCATATCAGGGGGTTCATGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAACAATTTGAAACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCAATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTTGTCACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACGAAATTTGGATTGGTGCGAGAAGCAGTTGACGATACTGCTGGCGCTGCTAAGCATGTCGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCAGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGGATGACAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATAATTCCAGGCACTGATAGGCGATTTAAGACCAGCATAGTCTTTTCTTTAGAAGAGGGTCCTGGTATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGTCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGTAACCAACCTCTACGAGCATCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAACATCAATGGCTGATCAGAGTGCACAAAATGCCCTAAGGCATCTAAAGGAATTTGCTACATTCTTGCGTGTGCTAGGGAGCTATCCTGTGGACACTAGCTCGATGTAA | 1128 | 0.4654 | MAASRIVAHPPPYLHRQSPPSDAAPSLNLTLLPKRYRNLGICASLRGDKPHSVELRATTSDVVVSRDLLSLPRPLSSTQLSASVSDGSCLRVAYQGVHGAYSESAAQKAYPNCEAVPCEQFETAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVCHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAYHKLQDAGAVASSAAAKIYGLNILDQDIQDDSDNVTRFLMLAREPIIPGTDRRFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRASDDSNNSKYFDYLFYVDFETSMADQSAQNALRHLKEFATFLRVLGSYPVDTSSM* | 376 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso12g0595 | 375 | PANTHER | AROGENATE DEHYDRATASE | 32 | 373 | - | - | |
| Gso12g0595 | 375 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Gso12g0595 | 375 | ProSitePatterns | Prephenate dehydratase signature 2. | 306 | 313 | IPR018528 | GO:0004664|GO:0009094 | |
| Gso12g0595 | 375 | ProSiteProfiles | ACT domain profile. | 280 | 369 | IPR002912 | - | |
| Gso12g0595 | 375 | Pfam | Prephenate dehydratase | 92 | 268 | IPR001086 | GO:0004664|GO:0009094 | |
| Gso12g0595 | 375 | Gene3D | - | 175 | 254 | - | - | |
| Gso12g0595 | 375 | CDD | PBP2_Ct-PDT_like | 91 | 268 | - | - | |
| Gso12g0595 | 375 | SUPERFAMILY | Periplasmic binding protein-like II | 91 | 272 | - | - | |
| Gso12g0595 | 375 | Gene3D | - | 87 | 174 | - | - | |
| Gso12g0595 | 375 | PANTHER | PREPHENATE DEHYDRATASE P PROTEIN | 32 | 373 | - | - | |
| Gso12g0595 | 375 | ProSiteProfiles | Prephenate dehydratase domain profile. | 91 | 266 | IPR001086 | GO:0004664|GO:0009094 | |
| Gso12g0595 | 375 | CDD | ACT_CM-PDT | 278 | 369 | - | - | |
| Gso12g0595 | 375 | ProSitePatterns | Prephenate dehydratase signature 1. | 242 | 264 | IPR018528 | GO:0004664|GO:0009094 | |
| Gso12g0595 | 375 | Gene3D | - | 273 | 372 | - | - | |
| Gso12g0595 | 375 | SUPERFAMILY | ACT-like | 261 | 370 | IPR045865 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso12g0595 | Gso-Chr12 | 5380460 | 5385907 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso12g0595 | K05359 | - | gmx:100787759 | 734.947 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso12g0595 | 12 | 5380460 | 5385907 | Gso11g1247 | 11 | 11482282 | 11487426 | GST |