Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1247 ATGGCGGCATCGCGAATCGTGGCCCATCCTCCGCCCTATCCCCACCGTCAATCTCCGCCGTCAGATGCCCCGCCGTCCCTCAACCTCACACTTAATCCAAAACGGTACCGTAACCTCGGCATTCGCGCCTCCCTTCGCGGCCACGAGGAGAAGAACAAGAACGATCTCGCCGATAAACCCCACTCCGTCGAGTTGCGAGCCACCAGCACCCCCGACGACGTCGTTTCCCGAGATCTGCTCTCTCTTCCGCGGCCTTTGTCTTCGACTCAGTTATCTGCTTCGGTGTCCGATAGCTCTCGCCTTCGTGTTGCATATCAGGGGGTTCGTGGTGCTTATAGTGAATCAGCAGCACAGAAGGCCTACCCAAATTGTGAAGCTGTGCCTTGTGAGCAATTCGACACCGCATTTGATGCTGTTGAAAGGTGGCTTGTGGACAGAGCAGTTTTGCCTATTGAGAATTCTTTAGGAGGGAGCATCCACAGAAATTATGACCTTTTACTCCGGCACAGTTTACATATAGTAGGAGAAGTAAATTTTGCAGTTCGACACTGTTTGATGGCCAACCATGGTGTTAAACGTGAGGATTTAAAACGGGTTCTAAGTCATCCACAGGCTCTTGCTCAATGTGAGAACACACTGACAAAATTTGGATTGGTGCGAGAAGCAGTTGATGATACGGCTGGTGCTGCTAAGCATGTTGCCTACCACAAACTACAAGATGCAGGAGCAGTTGCTAGTTCTGCTGCCGCAAAGATCTATGGCTTGAATATACTTGATCAAGACATTCAGGATGATAGTGATAATGTCACCCGATTTTTAATGTTAGCACGAGAACCTATGATTCCTGGCACTGATAGGCGATTTAAGACTAGCATAGTATTTTCTTTAGAAGAGGGTCCTGGGATACTTTTCAAAGCCCTTGCTGTTTTTGCTTTGCGTCAGATTAACCTTACAAAGATTGAAAGTCGTCCTTTGCGCAACCAACCTCTACGAGCAGATGATAGCAACAATTCCAAGTACTTTGATTATCTTTTCTATGTTGATTTTGAAGCATCAATGGCTGAGCAGAGTGCACAAAATGCCCTGAGGCATCTAAAGGAGTTTGCTACATTCTTGCGAGTGCTAGGGAGCTATCCTGTGGACACTAGCTTGACGTAA 1158 0.4775 MAASRIVAHPPPYPHRQSPPSDAPPSLNLTLNPKRYRNLGIRASLRGHEEKNKNDLADKPHSVELRATSTPDDVVSRDLLSLPRPLSSTQLSASVSDSSRLRVAYQGVRGAYSESAAQKAYPNCEAVPCEQFDTAFDAVERWLVDRAVLPIENSLGGSIHRNYDLLLRHSLHIVGEVNFAVRHCLMANHGVKREDLKRVLSHPQALAQCENTLTKFGLVREAVDDTAGAAKHVAYHKLQDAGAVASSAAAKIYGLNILDQDIQDDSDNVTRFLMLAREPMIPGTDRRFKTSIVFSLEEGPGILFKALAVFALRQINLTKIESRPLRNQPLRADDSNNSKYFDYLFYVDFEASMAEQSAQNALRHLKEFATFLRVLGSYPVDTSLT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1247 385 CDD PBP2_Ct-PDT_like 102 279 - -
Gso11g1247 385 Gene3D - 284 382 - -
Gso11g1247 385 PANTHER AROGENATE DEHYDRATASE 32 384 - -
Gso11g1247 385 ProSiteProfiles Prephenate dehydratase domain profile. 102 277 IPR001086 GO:0004664|GO:0009094
Gso11g1247 385 PANTHER PREPHENATE DEHYDRATASE P PROTEIN 32 384 - -
Gso11g1247 385 SUPERFAMILY Periplasmic binding protein-like II 102 283 - -
Gso11g1247 385 SUPERFAMILY ACT-like 272 380 IPR045865 -
Gso11g1247 385 MobiDBLite consensus disorder prediction 45 70 - -
Gso11g1247 385 Pfam Prephenate dehydratase 103 279 IPR001086 GO:0004664|GO:0009094
Gso11g1247 385 ProSitePatterns Prephenate dehydratase signature 2. 317 324 IPR018528 GO:0004664|GO:0009094
Gso11g1247 385 MobiDBLite consensus disorder prediction 1 32 - -
Gso11g1247 385 MobiDBLite consensus disorder prediction 45 66 - -
Gso11g1247 385 Gene3D - 186 265 - -
Gso11g1247 385 ProSiteProfiles ACT domain profile. 291 379 IPR002912 -
Gso11g1247 385 CDD ACT_CM-PDT 289 379 - -
Gso11g1247 385 Gene3D - 96 185 - -
Gso11g1247 385 ProSitePatterns Prephenate dehydratase signature 1. 253 275 IPR018528 GO:0004664|GO:0009094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1247 Gso-Chr11 11482282 11487426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1247 K05359 - gmx:100787387 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1247 11 11482282 11487426 Gso11g1247 11 11482282 11487426 ECH
Gso12g0595 12 5380460 5385907 Gso11g1247 11 11482282 11487426 GST