Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0557 ATGCTAAGTCGTAAACGACTCATCGTTTCGCTCTCTCTCGCCACTCTCCTTCTCTTCTCCTCCCTTTCCCTCACTCTCTGCGATAAAATCCCCCCTCAAAACGACAACAACAACGATGACGACGAAGATCTCAGCTTCCTCGAGGAACCCGATGACGCCGCCGCCACTTCGCACCACGGCCATTTTCCAGATCCCGACCGGTTCGACGAGGACGGCGACGACGACGGCGACTTCGGCGACTTCTCAGGCTTCGACCACTCGACGGAGGAGGCGTTCGAGGTGGATGACAAGGACGTCGTCGTTTTGAATGAGCGCAACTTCACTACCGTCGTCGAGAACAACCGCTTCATCATGGTCGAGTTCTACGCCCCCTGGTGCGGCCACTGCCAGGCCCTCGCGCCAGAGTACGCCGCCGCCGCCACCGAGCTCAAGCCCGACGGCGTCGTTCTCGCCAAAGTCGACGCCACCGTCGAAAACGAACTGGCGAACGAGTACGACGTTCAGGGTTTCCCCACCGTCTTCTTCTTCGTCGATGGGGTCCACAAGCCCTACACTGGCCAGAGAACCAAAGACGCTATAGTGACATGGATTAAGAAGAAGATAGGGCCTGGTGTGTCCAACATAACTACGGTGGATGATGCTGAACGCATATTGACAGCTGAAAGCAAAGTTGTTTTGGGCCTCCTTAACTCTTTAGTTGGTACGGAGAGTGACGAACTAGCTGCAGCATCAAAGCTTGAGGATGATGTCAATTTTTATCAAACTGTGGTAGCTGATGTGGCGAAGCTTTTCCATATTGATCCGAGTGTTAAACGGCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTGATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGCTTCCTTTGGTTACAATTTTTACAAGAGAAAGTGCCCCGGTAATCTTTGAAAGTCAAATCAAGAAACAGTTGTTGCTGTTTGTGACTTCAAATGATACAGAGAAGTTTGTTCCAGTATTTAAAGAAGCAGCAAAAAAATTCAAGGGGAAGCTGATCTTTGTTCATGTGGAATTGGATAATGAAGATGTAGGAAAGCCTGTTGCAGATTATTTTGGTATCACTGGGAATGGTCCCAAAGTACTTGCATATACAGGAAACGATGATGGAAGAAAATTTTTGCTTGATGAGGAGCTGACTGTTGACACAATTACGGCATTTGGGAATGATTTCCTTGAAGAAAAGCTAAAACCTTTCCTTAAGTCTGATCCAGTTCCTGAAAGTAATGACGGTGATGTGAAAATAGTTGTTGGGAATAACTTTGATGAAATTGTTTTGGATGAGTCAAAGGATGTTTTGCTTGAGATTTATGCACCCTGGTGCGGTCACTGCCAAGCCCTGGAACCAACATACAACAAGCTTGCTAAACATCTTCGCAGCATTGAGTCTATTGTTATAGCCAAGATGGACGGAACAACAAATGAGCATCCCAGGGCCAAGTCTGATGGATTCCCCACCCTTCTCTTCTTCCCAGCAGGCAACAAGAGTTCTGACCCTATTCCTGTTGATGTGGATCATACAGTGAAAGCCTTTTATAAGTTCCTCAGGAAACATGCATCAATCCCATTCCAGCTCCAGAAACCAACCTCAACTGCTAAAACCGGGAGTGAGAGTTCCTATGTCAAGGAGAGCCAAAGCAGCAGCACGGATGTGAAGGATGAATTATGA 1740 0.4736 MLSRKRLIVSLSLATLLLFSSLSLTLCDKIPPQNDNNNDDDEDLSFLEEPDDAAATSHHGHFPDPDRFDEDGDDDGDFGDFSGFDHSTEEAFEVDDKDVVVLNERNFTTVVENNRFIMVEFYAPWCGHCQALAPEYAAAATELKPDGVVLAKVDATVENELANEYDVQGFPTVFFFVDGVHKPYTGQRTKDAIVTWIKKKIGPGVSNITTVDDAERILTAESKVVLGLLNSLVGTESDELAAASKLEDDVNFYQTVVADVAKLFHIDPSVKRPALILLKKEEEKLNHFDGQFVKAEIADFVTSNKLPLVTIFTRESAPVIFESQIKKQLLLFVTSNDTEKFVPVFKEAAKKFKGKLIFVHVELDNEDVGKPVADYFGITGNGPKVLAYTGNDDGRKFLLDEELTVDTITAFGNDFLEEKLKPFLKSDPVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQALEPTYNKLAKHLRSIESIVIAKMDGTTNEHPRAKSDGFPTLLFFPAGNKSSDPIPVDVDHTVKAFYKFLRKHASIPFQLQKPTSTAKTGSESSYVKESQSSSTDVKDEL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0557 579 CDD PDI_b_family 205 304 - -
Gso12g0557 579 PRINTS Thioredoxin family signature 117 125 - -
Gso12g0557 579 PRINTS Thioredoxin family signature 125 134 - -
Gso12g0557 579 PRINTS Thioredoxin family signature 166 177 - -
Gso12g0557 579 ProSitePatterns Thioredoxin family active site. 118 136 IPR017937 -
Gso12g0557 579 ProSiteProfiles Thioredoxin domain profile. 83 202 IPR013766 -
Gso12g0557 579 MobiDBLite consensus disorder prediction 550 570 - -
Gso12g0557 579 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 571 - -
Gso12g0557 579 SUPERFAMILY Thioredoxin-like 433 543 IPR036249 -
Gso12g0557 579 TIGRFAM ER_PDI_fam: protein disulfide isomerase 97 579 IPR005792 GO:0003756
Gso12g0557 579 MobiDBLite consensus disorder prediction 550 579 - -
Gso12g0557 579 Pfam Thioredoxin 99 199 IPR013766 -
Gso12g0557 579 Pfam Thioredoxin 437 521 IPR013766 -
Gso12g0557 579 Pfam Thioredoxin-like domain 241 413 - -
Gso12g0557 579 CDD PDI_b'_family 316 416 - -
Gso12g0557 579 Gene3D Glutaredoxin 431 545 - -
Gso12g0557 579 PANTHER PROTEIN DISULFIDE ISOMERASE 2 571 - -
Gso12g0557 579 Gene3D Glutaredoxin 89 201 - -
Gso12g0557 579 CDD PDI_a_PDI_a'_C 437 539 - -
Gso12g0557 579 CDD PDI_a_family 100 197 - -
Gso12g0557 579 Gene3D Glutaredoxin 202 305 - -
Gso12g0557 579 TIGRFAM pdi_dom: protein disulfide-isomerase domain 102 200 IPR005788 GO:0003756
Gso12g0557 579 MobiDBLite consensus disorder prediction 54 74 - -
Gso12g0557 579 Gene3D Glutaredoxin 306 430 - -
Gso12g0557 579 SUPERFAMILY Thioredoxin-like 91 202 IPR036249 -
Gso12g0557 579 SUPERFAMILY Thioredoxin-like 207 316 IPR036249 -
Gso12g0557 579 ProSiteProfiles Thioredoxin domain profile. 423 544 IPR013766 -
Gso12g0557 579 ProSitePatterns Thioredoxin family active site. 457 475 IPR017937 -
Gso12g0557 579 SUPERFAMILY Thioredoxin-like 304 434 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0557 Gso-Chr12 4993204 4997197 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0557 K09580 - gmx:100785630 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0557 12 4993204 4997197 Gso11g1514 11 17660832 17665422 GST
Gso11g3383 11 49715644 49719949 Gso12g0557 12 4993204 4997197 PCT
Gso12g0557 12 4993204 4997197 Gso11g3383 11 49715644 49719949 PCT