Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3383 ATGCGAATCCTCGTCCTGCTCTCTCTCGCCACCCTTCTCCTCTTCTCCTCCTTCTCTCCCACCTTCTGCGACCACCTCGCCGACGACGAGGACCTCAGCTTCCTCGACGAGCCCTCCGCCGCGCCGGAGCACGACCACCACTACGGCGCCGATGACTCCAATTTCGGCGACTTTGAGGACTTCGAGGAGGACGACGCGGAGGCGTACAAGCAGCCCGAGGTGGACGAGAAGGACGTCGTCGTTTTGAAGGAGAAGAACTTCACCGACGCCGTCAAGAACAACCGCTTCGTCATGGTCGAGTTCTACGCGCCCTGGTGCGGCCACTGCCAGGCCCTCGCGCCGGAGTACGCCGCCGCCGCGACGGAACTCAAGGGCGAAGACGTAATTTTGGCAAAGGTGGATGCCACCGAGGAGAATGAATTGGCGCAGCAGTACGATGTTCAGGGTTTCCCCACTGTCCACTTCTTCGTTGATGGCATTCACAAGCCTTATAATGGCCAAAGGACCAAAGATGCTATAGTGACGTGGATTAGGAAGAAGATCGGACCTGGCATATACAACTTGACTACAGTGGAGGAGGCTCAACGCATTTTGACCAACGAAACTAAAGTTGTTTTGGGCTTCCTCAACTCTTTAGTTGGTCCTGAGAGTGAGGAGCTTGCTGCTGCTTCAGGGCTTGAGGATGATGTCAATTTTTATCAAACTGTGAATCCTGATGTGGCAAAGCTTTTCCATATTGACCAAGATGTTAAGCGTCCAGCATTGATCCTCATTAAGAAAGAGGAGGAAAAACTTAACCACTTTGATGGCAAATTCGAGAAGTCAGCAATAGCGGACTTTGTCTTCTCCAACAAGCTTCCTTTGGTAACAATTTTTACAAGAGAAAGTGCCCCATCAGTCTTTGAAAATCCAATCAAGAAACAGTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGACTTTGGTCCCAGCATTTAAAGAAGCAGCAAAGTCTTTCAAGGGAAAGTTGATCTTTGTATATGTGGAAATGGATAACGAAGATGTTGGAAAGCCTGTTTCAGAATACTTTGGTATCAGTGGGAATGCTCCAAAAGTACTTGGATACACTGGGAATGATGATGGAAAAAAATTTGTGCTTGATGGAGAGGTGACTACTGACAAAATTAAGGCATTTGGGGAAGATTTCGTTGAAGACAAGCTAAAACCTTTTTACAAGTCAGATCAAGTTCCTGAAAGTAATGATGGTGATGTGAAAATAGTAGTTGGGAATAATTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGATTTATGCTCCCTGGTGTGGCCATTGCCAATCACTGGAGCCAATATACAACAAGCTTGCAAAACATCTTCGCAATATTGATTCTCTTGTAATAGCCAAGATGGATGGAACAACAAATGAGCATCCCAGGGCTAAGCCTGATGGATTCCCCACTCTTCTCTTCTTCCCGGCAGGAAACAAGAGTTTTGACCCTATTACTGTTGATACAGATCGTACAGTGGTAGCCTTCTACAAGTTCCTCAAGAAACATGCATCAATCCCATTCAAGCTCCAGAAACCAACCTCAACTTCTGAATCCGATTCCAAGGGGAGCTCTGATGCCAAAGAGAGCCAGACTAGTGATGTGAAGGATGAATTATGA 1677 0.4687 MRILVLLSLATLLLFSSFSPTFCDHLADDEDLSFLDEPSAAPEHDHHYGADDSNFGDFEDFEEDDAEAYKQPEVDEKDVVVLKEKNFTDAVKNNRFVMVEFYAPWCGHCQALAPEYAAAATELKGEDVILAKVDATEENELAQQYDVQGFPTVHFFVDGIHKPYNGQRTKDAIVTWIRKKIGPGIYNLTTVEEAQRILTNETKVVLGFLNSLVGPESEELAAASGLEDDVNFYQTVNPDVAKLFHIDQDVKRPALILIKKEEEKLNHFDGKFEKSAIADFVFSNKLPLVTIFTRESAPSVFENPIKKQLLLFATSNDSETLVPAFKEAAKSFKGKLIFVYVEMDNEDVGKPVSEYFGISGNAPKVLGYTGNDDGKKFVLDGEVTTDKIKAFGEDFVEDKLKPFYKSDQVPESNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQSLEPIYNKLAKHLRNIDSLVIAKMDGTTNEHPRAKPDGFPTLLFFPAGNKSFDPITVDTDRTVVAFYKFLKKHASIPFKLQKPTSTSESDSKGSSDAKESQTSDVKDEL* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3383 558 MobiDBLite consensus disorder prediction 530 558 - -
Gso11g3383 558 Pfam Thioredoxin-like domain 221 391 - -
Gso11g3383 558 SUPERFAMILY Thioredoxin-like 72 182 IPR036249 -
Gso11g3383 558 ProSitePatterns Thioredoxin family active site. 437 455 IPR017937 -
Gso11g3383 558 TIGRFAM pdi_dom: protein disulfide-isomerase domain 82 180 IPR005788 GO:0003756
Gso11g3383 558 ProSiteProfiles Thioredoxin domain profile. 60 182 IPR013766 -
Gso11g3383 558 CDD PDI_a_PDI_a'_C 417 519 - -
Gso11g3383 558 CDD PDI_a_family 80 177 - -
Gso11g3383 558 ProSiteProfiles Thioredoxin domain profile. 394 524 IPR013766 -
Gso11g3383 558 PANTHER PROTEIN DISULFIDE ISOMERASE 2 548 - -
Gso11g3383 558 PRINTS Thioredoxin family signature 97 105 - -
Gso11g3383 558 PRINTS Thioredoxin family signature 105 114 - -
Gso11g3383 558 PRINTS Thioredoxin family signature 146 157 - -
Gso11g3383 558 SUPERFAMILY Thioredoxin-like 284 414 IPR036249 -
Gso11g3383 558 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
Gso11g3383 558 TIGRFAM ER_PDI_fam: protein disulfide isomerase 77 558 IPR005792 GO:0003756
Gso11g3383 558 Gene3D Glutaredoxin 412 525 - -
Gso11g3383 558 CDD PDI_b'_family 306 396 - -
Gso11g3383 558 CDD PDI_b_family 185 284 - -
Gso11g3383 558 SUPERFAMILY Thioredoxin-like 413 524 IPR036249 -
Gso11g3383 558 PANTHER PROTEIN DISULFIDE-ISOMERASE 2 548 - -
Gso11g3383 558 Gene3D Glutaredoxin 282 411 - -
Gso11g3383 558 MobiDBLite consensus disorder prediction 541 558 - -
Gso11g3383 558 Gene3D Glutaredoxin 184 281 - -
Gso11g3383 558 Pfam Thioredoxin 79 179 IPR013766 -
Gso11g3383 558 Pfam Thioredoxin 417 502 IPR013766 -
Gso11g3383 558 Gene3D Glutaredoxin 63 183 - -
Gso11g3383 558 SUPERFAMILY Thioredoxin-like 186 296 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3383 Gso-Chr11 49715644 49719949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3383 K09580 - gmx:100804924 1047.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3383 11 49715644 49719949 Gso12g0557 12 4993204 4997197 PCT
Gso11g3383 11 49715644 49719949 Gso11g1514 11 17660832 17665422 PCT
Gso12g0557 12 4993204 4997197 Gso11g3383 11 49715644 49719949 PCT
Gso11g1514 11 17660832 17665422 Gso11g3383 11 49715644 49719949 PCT