Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0541 ATGGCTGCTCCACCGGCAAGGGCTCGTGCCGATTACGATTATCTCATAAAGCTTCTCTTGATCGGTGACAGCGGTGTTGGGAAAAGTTGCCTCCTTCTGCGTTTCTCCGATGGTTCTTTCACCACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCTTGATGGCAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGGCAGGAGCGGTTTCGGACAATTACAACTGCTTACTACCGTGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAGATGAAGCATCATTTAACAATATCAGGAATTGGATTCGCAATATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCTGATATGGATGAAAGCAAAAGGGCCGTGCCTACGTCCAAGGGCCAAGCACTGGCTGATGAGTATGGGATCAAATTCTTTGAAACTAGTGCAAAGACAAATCTAAACGTGGAGGAAGTTTTCTTCTCAATAGCAAGAGATATAAAACAAAGGCTGGCTGACACTGACACCAAGGCAGAGCCATCAACAATCAAAATCAACCAAGACCAGTCAGGAGGGGCTGGACAGGCTGCACAAAAATCGGCTTGTTGTGGTTGA 645 0.4465 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDTKAEPSTIKINQDQSGGAGQAAQKSACCG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0541 214 SMART rab_sub_5 16 180 - -
Gso12g0541 214 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Gso12g0541 214 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Gso12g0541 214 ProSiteProfiles small GTPase Rab1 family profile. 11 213 - -
Gso12g0541 214 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Gso12g0541 214 CDD Rab8_Rab10_Rab13_like 13 180 - -
Gso12g0541 214 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Gso12g0541 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 190 IPR027417 -
Gso12g0541 214 PANTHER BNAA07G37610D PROTEIN 1 213 - -
Gso12g0541 214 Gene3D - 9 213 IPR027417 -
Gso12g0541 214 MobiDBLite consensus disorder prediction 189 206 - -
Gso12g0541 214 PRINTS Transforming protein P21 ras signature 16 37 - -
Gso12g0541 214 PRINTS Transforming protein P21 ras signature 39 55 - -
Gso12g0541 214 PRINTS Transforming protein P21 ras signature 57 79 - -
Gso12g0541 214 PRINTS Transforming protein P21 ras signature 119 132 - -
Gso12g0541 214 PRINTS Transforming protein P21 ras signature 155 177 - -
Gso12g0541 214 ProSiteProfiles small GTPase Ras family profile. 6 214 IPR001806 GO:0003924|GO:0005525
Gso12g0541 214 SMART ras_sub_4 17 180 - -
Gso12g0541 214 MobiDBLite consensus disorder prediction 185 214 - -
Gso12g0541 214 PANTHER LD44762P 1 213 - -
Gso12g0541 214 SMART arf_sub_2 1 181 - -
Gso12g0541 214 SMART ran_sub_2 21 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0541 Gso-Chr12 4848979 4853076 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0541 K07901 - gmx:100779203 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0541 12 4848979 4853076 Gso11g1203 11 10874341 10878493 GST
Gso15g0357 15 3202646 3206252 Gso12g0541 12 4848979 4853076 PCT
Gso11g3449 11 50420016 50423591 Gso12g0541 12 4848979 4853076 PCT
Gso12g0541 12 4848979 4853076 Gso15g0357 15 3202646 3206252 PCT
Gso12g0541 12 4848979 4853076 Gso11g3449 11 50420016 50423591 PCT