Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3449 ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCCGATGGTTCTTTCACAACTAGTTTCATCACAACCATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGTTGA 648 0.4321 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3449 215 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Gso11g3449 215 CDD Rab8_Rab10_Rab13_like 13 180 - -
Gso11g3449 215 SMART arf_sub_2 1 181 - -
Gso11g3449 215 PRINTS Transforming protein P21 ras signature 16 37 - -
Gso11g3449 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Gso11g3449 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Gso11g3449 215 PRINTS Transforming protein P21 ras signature 119 132 - -
Gso11g3449 215 PRINTS Transforming protein P21 ras signature 155 177 - -
Gso11g3449 215 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Gso11g3449 215 Gene3D - 9 214 IPR027417 -
Gso11g3449 215 SMART rab_sub_5 16 180 - -
Gso11g3449 215 SMART ran_sub_2 21 213 - -
Gso11g3449 215 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Gso11g3449 215 SMART ras_sub_4 17 180 - -
Gso11g3449 215 ProSiteProfiles small GTPase Ras family profile. 6 208 IPR001806 GO:0003924|GO:0005525
Gso11g3449 215 PANTHER LD44762P 1 215 - -
Gso11g3449 215 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Gso11g3449 215 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Gso11g3449 215 PANTHER - 1 215 - -
Gso11g3449 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3449 Gso-Chr11 50420016 50423591 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3449 K07901 - gmx:100780673 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0357 15 3202646 3206252 Gso11g3449 11 50420016 50423591 GST
Gso11g3449 11 50420016 50423591 Gso12g0541 12 4848979 4853076 PCT
Gso11g3449 11 50420016 50423591 Gso11g1203 11 10874341 10878493 PCT
Gso12g0541 12 4848979 4853076 Gso11g3449 11 50420016 50423591 PCT
Gso11g1203 11 10874341 10878493 Gso11g3449 11 50420016 50423591 PCT