Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0539 ATGGCACCAAAGGCAGAGAAGAAGCCAGCGGAGAAGAAGCCCGCGGAGGAGAAGAAGTCGACGGTGGGAGACAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGAAAGAAGCTTCCTAAGGAGGGAGGAGCCGGCGGGGAAGGGGGGAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACATACAAGATATACATATTCAAGGTGCTGAAGCAGGTCCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGACTTGCCCGCTACAACAAGAAGCCCACCATCACTTCAAGGGAAATCCAGACCGCGGTCAGGCTTGTGCTGCCCGGTGAATTGGCCAAGCACGCCGTTTCTGAGGGTACCAAGGCCGTCACCAAGTTCACCAGAGAGAAGAAGCCAGCGGAGAAGAAGCCGGTGGAGGAGAAGAAGTCGACGGTGGGAGACAAGGCTCCGGCGGAGAAGAAGCCGAAGGCCGGAAAGAAGCTTCCGAAGGAGGGAGGAGCCGGCGGAGAAGGGGGGAAGAAGAAAAAGAGGAACAAGAAGAGCGTGGAGACATACAAGATATACATATTCAAGGTTCTGAAGCAGGTCCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCTCAGGAATCTTCCAGACTTGCCCGCTACAACAAGAAGCCCACCATCACTTCAAGGGAGATCCAGACCGCGGTCAGGCTTGTGCTGCCCGGTGAACTGGCCAAGCACGCCGTTTCTGAGGGTACCAAGGCCGTCACCAAGTTCACCAGCTCTTGA 879 0.5461 MAPKAEKKPAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTREKKPAEKKPVEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0539 292 Gene3D Histone, subunit A 151 292 IPR009072 GO:0046982
Gso12g0539 292 Gene3D Histone, subunit A 22 150 IPR009072 GO:0046982
Gso12g0539 292 SUPERFAMILY Histone-fold 35 149 IPR009072 GO:0046982
Gso12g0539 292 PRINTS Histone H2B signature 62 80 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PRINTS Histone H2B signature 81 101 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PRINTS Histone H2B signature 103 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PRINTS Histone H2B signature 133 146 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 Pfam Core histone H2A/H2B/H3/H4 150 268 IPR007125 GO:0003677
Gso12g0539 292 Pfam Core histone H2A/H2B/H3/H4 4 125 IPR007125 GO:0003677
Gso12g0539 292 PANTHER HISTONE H2B 5 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PANTHER HISTONE H2B 149 292 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 MobiDBLite consensus disorder prediction 1 55 - -
Gso12g0539 292 SUPERFAMILY Histone-fold 178 292 IPR009072 GO:0046982
Gso12g0539 292 MobiDBLite consensus disorder prediction 138 198 - -
Gso12g0539 292 ProSitePatterns Histone H2B signature. 117 139 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 MobiDBLite consensus disorder prediction 143 192 - -
Gso12g0539 292 MobiDBLite consensus disorder prediction 1 49 - -
Gso12g0539 292 ProSitePatterns Histone H2B signature. 260 282 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 SMART h2b3 195 291 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 SMART h2b3 52 148 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso12g0539 292 PANTHER HISTONE H2B.1-RELATED 5 148 - -
Gso12g0539 292 PANTHER HISTONE H2B.1-RELATED 149 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0539 Gso-Chr12 4824320 4837569 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0539 K11252 - gmx:100776374 409.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0539 12 4824320 4837569 Gso11g1201 11 10843894 10844826 GST