Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1201 ATGGCACCAAAGGCGGAGAAGAAGCCCGCAGAGGAGAAGAAGTCCACGGTGGGAGACAAGGCTCCGGCGGAGAAGAAGCCAAAGGCCGGAAAGAAGCTTCCGAAGGAGGGAGGCGCCGGCGGAGAAGGGAAGAAGAAGAAGAGGAACAAGAAGAGCGTGGAGACATACAAGATCTACATCTTCAAGGTTCTGAAGCAGGTTCACCCTGACATTGGTATCTCAAGCAAGGCCATGGGAATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTTGCCCAGGAATCTTCTAGACTTGCCCGCTACAACAAGAAACCCACCATCACTTCGAGGGAAATTCAGACCGCGGTCAGGCTTGTGCTGCCCGGTGAATTGGCTAAGCACGCCGTCTCTGAGGGTACCAAGGCCGTCACCAAGTTTACTAGCTCTTAA 432 0.5324 MAPKAEKKPAEEKKSTVGDKAPAEKKPKAGKKLPKEGGAGGEGKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1201 143 PRINTS Histone H2B signature 56 74 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 PRINTS Histone H2B signature 75 95 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 PRINTS Histone H2B signature 97 114 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 PRINTS Histone H2B signature 114 127 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 PRINTS Histone H2B signature 127 140 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 PANTHER HISTONE H2B 4 143 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 Pfam Core histone H2A/H2B/H3/H4 6 119 IPR007125 GO:0003677
Gso11g1201 143 SMART h2b3 46 142 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 ProSitePatterns Histone H2B signature. 111 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1201 143 Gene3D Histone, subunit A 2 143 IPR009072 GO:0046982
Gso11g1201 143 SUPERFAMILY Histone-fold 27 143 IPR009072 GO:0046982
Gso11g1201 143 MobiDBLite consensus disorder prediction 1 50 - -
Gso11g1201 143 PANTHER HISTONE H2B.1-RELATED 4 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1201 Gso-Chr11 10843894 10844826 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1201 K11252 - gmx:100820177 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1201 11 10843894 10844826 Gso11g1201 11 10843894 10844826 ECH
Gso12g0539 12 4824320 4837569 Gso11g1201 11 10843894 10844826 GST