Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0534 ATGGCAACGAATTCTTCTAATGGAGCAACAAAGCAACCTCCCATGCCATCTCCCTTGCGGTTTTCCAAGTTCTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAAATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGCCCAGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGACAATAAAGACAAATGTGATTGGAACACTGAACATGCTTGGTCTTGCTAAGCGTGTGGGAGCAAGGATTTTGCTTACATCTACTTCAGAAGTATATGGGGACCCTCTTGAGCATCCACAACCAGAAAGCTATTGGGGCAATGTTAATCCTATTGGAGTTCGGAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCACGGAATCGAAATACGCATTGCGAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTTGTCAGTAACTTCATCGCTCAAGCAATTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTTTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGCGAATTTACAATGATTGAACTTGCTGAGAATGTGAAAGAGCTTATTAATCCAAAAGTGGAGATAAATATGGTTGAGAACACTCCTGACGATCCTCGTCAGAGAAAACCAGACATTACAAAAGCAAAGGAATTGCTGGGATGGGAACCAAAGGTCAAGTTGCGTGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCAGAGGCTTGGGGTTCCCAAGAGCAACTAA 1029 0.4218 MATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQAIRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMIELAENVKELINPKVEINMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRQRLGVPKSN* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0534 342 Pfam GDP-mannose 4,6 dehydratase 32 326 IPR016040 -
Gso12g0534 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE 3-RELATED 1 341 - -
Gso12g0534 342 CDD UGD_SDR_e 29 333 - -
Gso12g0534 342 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 23 336 IPR036291 -
Gso12g0534 342 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 341 IPR044516 GO:0042732|GO:0048040|GO:0070403
Gso12g0534 342 Gene3D - 26 152 - -
Gso12g0534 342 Gene3D - 153 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0534 Gso-Chr12 4790472 4795456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0534 26 325 Miscellaneous Gene Families AT1G02000 23.795 2.20e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0534 K08678 - gmx:100819843 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0534 12 4790472 4795456 Gso15g0351 15 3172880 3177880 PCT
Gso12g0534 12 4790472 4795456 Gso11g3457 11 50476771 50481305 PCT