Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0525 ATGGGTCAGGGGCTGAGTTGCAGAGGGAGCCATGAGCATGGCCTATTCCGTGCTGTGCAGCATGGGGACCTAGACACTGTCGCAGCTTTGCTACAAACACACCCTTCTCTTTTGAACCACACCACTGTCTATGATCACCACTCTCCTCTTCATATTGCCGCTGCTAATGGCCAGATCCAGGTTTTGTCTTGGCTTTTGGATGGATCTGTGAATCCAGATGTGTTGAATCGCCAAAAGCAGACACCGCTTATGTTGGCTGCAATGCACGGAAAGATCGCCTGTGTGGAAAAGCTCCTTGAAGCTGGTGCTAATGTATTAATGTTTGATGCTTGTTACGGAAGAACCTGTTTGCACTATGCAGCTTACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCTGCAGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGTTTTGCTCGGTTTGTGAATATTAGAGATGGTAGACGTGCAACACCATTGCATTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTACATATTCTATTGTACAGTGGAGCTCTTGTTTCTGCTTCAACCGGAAGATATGGATGTCCTGGGAGCACTCCTCTTCATCTGGCAGCCAAAGGGGGATCTTTGGATTGCATCCGGGAACTATTGGCATGGGGTGCAGATCGCCTTCAACGTGATGCCTCTGGGCGAATACCATATGTAGTTGCTCTGAAACACAGACATGGCGCATGTGCAACATTGCTGAATCTTTCATCTGCTGAGTCTCTTGTATGGCCATCATCTTTGAAGATAATCAGTGAGCTTAATCCAAACGCCAAAGAGTTATTAGAGCGGGCCCTGATGGATGCAAACAGGGAAAGAGAGAAGAACATATTGAAAGGGAGTGATTACTCTCTTCCATCTCCATCACATTCTGATGGGGTAGATGACAATATCTCCGAGGTTAGTGAGACGGAATTATGCTGCATCTGCTTTGAGCAAGTGTGTACAATTGAAGTCCAAGACTGTGGTCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGTCACAACAAGCCCAACCCTTCTACTTCTCGTGTTATCCCACCAGTTTGTCCATTCTGCCGAAGCAGCATAGCAAGATTAGTAGTTGTAAAAAACGAAAGCCCTGATGACATTAATCAAGATGGTGTTGATATCACTTGTTCCAAGCCTAGCAAGTCAAGGAAATTGCGAAACTTGAACGAGGACGGTAGCAGCAGCATCAAGGGATTATCAAATGTGAACTCATTTGGAAAAATGGGTGGTCGCAGCTCTGGAAAAATTGCTGCTGAAAATGAGTGGGAAGATGATAAACAACAGTGA 1344 0.4621 MGQGLSCRGSHEHGLFRAVQHGDLDTVAALLQTHPSLLNHTTVYDHHSPLHIAAANGQIQVLSWLLDGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDACYGRTCLHYAAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGRRATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKGGSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACATLLNLSSAESLVWPSSLKIISELNPNAKELLERALMDANREREKNILKGSDYSLPSPSHSDGVDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPSTSRVIPPVCPFCRSSIARLVVVKNESPDDINQDGVDITCSKPSKSRKLRNLNEDGSSSIKGLSNVNSFGKMGGRSSGKIAAENEWEDDKQQ* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0525 447 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Gso12g0525 447 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Gso12g0525 447 Gene3D - 9 146 IPR036770 -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Gso12g0525 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 386 IPR013083 -
Gso12g0525 447 SUPERFAMILY Ankyrin repeat 15 247 IPR036770 -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Gso12g0525 447 PANTHER HOMEOBOX PROTEIN WARIAI 1 442 - -
Gso12g0525 447 Gene3D - 148 197 IPR036770 -
Gso12g0525 447 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 442 - -
Gso12g0525 447 SUPERFAMILY RING/U-box 313 374 - -
Gso12g0525 447 MobiDBLite consensus disorder prediction 404 447 - -
Gso12g0525 447 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Gso12g0525 447 MobiDBLite consensus disorder prediction 410 427 - -
Gso12g0525 447 Pfam Ankyrin repeats (many copies) 194 232 IPR002110 GO:0005515
Gso12g0525 447 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 45 74 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 194 223 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 78 107 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 112 142 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 157 186 IPR002110 GO:0005515
Gso12g0525 447 SMART ANK_2a 10 39 IPR002110 GO:0005515
Gso12g0525 447 Pfam Ankyrin repeats (3 copies) 112 184 IPR002110 GO:0005515
Gso12g0525 447 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Gso12g0525 447 Gene3D - 198 252 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0525 Gso-Chr12 4694204 4697848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0525 12 330 Miscellaneous Gene Families AT5G60070 27.003 1.26e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0525 - - gmx:100815043 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0525 12 4694204 4697848 Gso11g1187 11 10676138 10679780 GST
Gso15g0344 15 3101608 3105152 Gso12g0525 12 4694204 4697848 PCT
Gso11g3465 11 50555581 50558912 Gso12g0525 12 4694204 4697848 PCT
Gso12g0525 12 4694204 4697848 Gso15g0344 15 3101608 3105152 PCT
Gso12g0525 12 4694204 4697848 Gso11g3465 11 50555581 50558912 PCT