Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3465 ATGGGTCAGAGCCTGAGTTGCAGTGGCAACCATGACCACGGCCTCTTCACCGCCGTGCTGCACGGCGACCTTCAAATTGTCACAACTCTCTTGGATTCCGACCCTTCTCTCTTGCACCAAACAACTCTCTACGATCGCCACTCTCCTCTTCATATTGCTGCAGCCAATGGCCAGATCGAGATTCTGTCTAGGCTCTTAGATGGATCTCTTAACCCTGATGTTTTAAATCGCCACAAACAGACTCCGCTTATGTTGGCAGCAATGCACGGGAACATCGCCTGTGTGGAGAAGCTTCTTCAAGCCGGAGCTAATGTTTTGATGTTTGATACTATTTACGGGAGAACCTGCTTACACTATTCCGCTTACTACGGCCATTCTTCTTGCCTTAAGGCTATTCTTTCCGCTGCTCAATCTAGTCCAGTGGCTGCTTCTTGGGGGTTTGCTCGGTTTGTGAATATTAGAGATGGAAAAGGTGCAACGCCATTGCACTTGGCGGCTCGTCAGAGGCGGTCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACTGGTGGATATGGCTGTCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGAGGATCTCTGGATTGCATTCGTGAATTGTTGGCATGGGGTGCAGATCGTCTTCAACGCGATGCATCTGGGCGTATACCATATATGGTTGCCCTTAAACACAAACATGGAGCCTGTGCATCATTGCTAAATCCTACATCTGCAGAACCTCTTGTCTGGCCGTCTCCATTGAAGTTCATCAGTGAGCTTAATCCTGAAGCCAAAGCTTTATTAGAGCAGGCCTTGATGGATGCAAACAGAGAAAGAGAGAAAAACATATTGAAAGGGAGTTCTTACTCTCTTCCATCTCCATCTCATTCTGATGGGGTAGCTGATAATACGTCTGAGGTTAGTGAATCCGAATTATGTTGCATCTGCTTTGAGCAGGTGTGCACAATTGAAGTTCAGAACTGTGGCCACCAGATGTGTGCACAATGCACACTAGCCCTGTGTTGCCACAACAAGCCCAACCCTGCCACTGCCTGTCTTACTCCACCAGTTTGTCCATTTTGTCGAAGCACCATAACAAGACTTGTTGTTGTGAAGACGGAATGCCACGATGAAACTGATCAAGACAGTGTTGATATCAACTGTTCCAAGCTGAGCAAGTCATCAAGGAAACTTAGAAACTTGAATGACATTGGTAGCAGCAGCTTCAAGGGACTATCTAGTGTTAGTTCATTCGGGAAATTGGGTAGCCGCAGCTCTGGAAGGATTGCTGCAGAGTGGCTTGATAAACAGTGA 1335 0.4719 MGQSLSCSGNHDHGLFTAVLHGDLQIVTTLLDSDPSLLHQTTLYDRHSPLHIAAANGQIEILSRLLDGSLNPDVLNRHKQTPLMLAAMHGNIACVEKLLQAGANVLMFDTIYGRTCLHYSAYYGHSSCLKAILSAAQSSPVAASWGFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMDANREREKNILKGSSYSLPSPSHSDGVADNTSEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHDETDQDSVDINCSKLSKSSRKLRNLNDIGSSSFKGLSSVSSFGKLGSRSSGRIAAEWLDKQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3465 444 SMART ANK_2a 157 186 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 194 223 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 227 256 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 112 142 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 10 39 IPR002110 GO:0005515
Gso11g3465 444 SMART ANK_2a 78 107 IPR002110 GO:0005515
Gso11g3465 444 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Gso11g3465 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 378 IPR013083 -
Gso11g3465 444 Gene3D - 147 197 IPR036770 -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Gso11g3465 444 Gene3D - 9 146 IPR036770 -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Gso11g3465 444 SUPERFAMILY Ankyrin repeat 10 250 IPR036770 -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
Gso11g3465 444 Gene3D - 198 251 IPR036770 -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Gso11g3465 444 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Gso11g3465 444 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Gso11g3465 444 Pfam Ankyrin repeats (3 copies) 112 183 IPR002110 GO:0005515
Gso11g3465 444 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 444 - -
Gso11g3465 444 PANTHER HOMEOBOX PROTEIN WARIAI 1 444 - -
Gso11g3465 444 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Gso11g3465 444 SUPERFAMILY RING/U-box 313 375 - -
Gso11g3465 444 Pfam Ankyrin repeats (many copies) 195 234 IPR002110 GO:0005515
Gso11g3465 444 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3465 Gso-Chr11 50555581 50558912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3465 12 211 Miscellaneous Gene Families AT5G02620 29.126 4.09e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3465 - - gmx:100786708 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0344 15 3101608 3105152 Gso11g3465 11 50555581 50558912 GST
Gso11g3465 11 50555581 50558912 Gso12g0525 12 4694204 4697848 PCT
Gso11g3465 11 50555581 50558912 Gso11g1187 11 10676138 10679780 PCT
Gso12g0525 12 4694204 4697848 Gso11g3465 11 50555581 50558912 PCT
Gso11g1187 11 10676138 10679780 Gso11g3465 11 50555581 50558912 PCT