Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0505 ATGATTTTTTCAAGGATTGCACGCTCCGTTTCGCGGTCGTCTCGCGCTAGAAATTTATTACACGGTGATGGGAGATTGGGAACCCATGTCGGATTGCCACGGACGAATGCGTGTTCTGAAGGAGCCGAAGGGGTATTAGGGTTTGTTAGGGGCTACGTATCTTCTGCCAGAGCTCGCAGTAATGGCCTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTGCAGCAAAGCTCCAAAGAAGAAGAATTATGAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAGTCACCCCATTATTGTTGATGGGGCTATTTCTTACATCCTTTTCGTTTGGTCCTCGTGAACAGAAGCAGATTAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCTCAAATAAATCAGTTGCCAAAGTATATGTAAGGAACACTCCCCTCAACCAAACAGATAATGAACTAGCCCAAGGGACCCAACCTGCAATTGGATCTGGAGGCCAGTATAAATATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGAGAAGCTAGAGGAAGCGCAAGAAGCTCTGGGCATTTACTCTCATGATTTTGTGCCTGTCACATATTCTTCTGAAGTGGTTTGGTACCAGGAATTGATGAGGTTTGCTCCAACACTGTTGCTTTTGGGATCTCTCTTGTATATGGGAAGGAGAATGCAAGGTGGAATTGGTGTTGGTGGCAGTGGTGGCGGCAAGGGTGCCCGTGGAATATTCAACATAGGAAAAGCACCAGTTACTAAAGTAGACAAAAATGCCAAAAACAAGATCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTTGGTGCAAAAATTCCAAAAGGTGCTCTCTTGGTTGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCTACAGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGTGTTCACCTAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGAGCAAGGCGGGGTAGTTTTTCTGGTGCAAATGATGAACGTGAAAGTACTTTAAATCAATTGTTGGTCGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTGTTGGCAGGAACAAATAGGCCTGAAATCTTAGACAAAGCTCTTCTTAGGCCTGGGCGATTTGACCGCCAGATAACAATTGACAAACCTGATATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAGAAAATCAAACTTGATCATGAGCCTTCATATTATTCTCCAAGGCTTGCAGCCCTTACACCTGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAAGGAACACAAGTCACAATGGAACATTTTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGGTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATGCTGTTTCAGGTTGGTTCTTGGAGCATGTTGAGCCCTTGTTGAAAGTAACTATTGTTCCACGTGGCACTGCTGCTCTTGGGTTTGCCCAATATGTTCCCAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACACTTGGCGGTCGGGCTGCTGAGCAGGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGCTGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAGTAGGCCTCCTCTCCTTCCCTCCAACTGAGGGCTCATATGAGTTTTCCAAACCATACAGCAGCAAAACTGCTGCAATCATCGATAGCGAAGTGCGTGATTGGGTGGACAAAGCATACAAACATACGATTCAGCTTATCGAGGAACACAAGGAGCAAGTTACTGAAATTGCAGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGACGACTTGCTTCGAGTTTTGGGCGAGCGGCCGTTCAAGGCTACTGAACTCACCAATTATGATAGATTTAAGCAGGGTTTTATAGAGGAAGAGGAAAAGGTCGTGGAAAGCACCGTAGACACGCCTGAGGAAGGTGGTGGGTCTTCACCTCTAGAACCCCAGGTTGTTCCCACATAG 2433 0.4394 MIFSRIARSVSRSSRARNLLHGDGRLGTHVGLPRTNACSEGAEGVLGFVRGYVSSARARSNGLVSNLPDFKSVAANPRIRRLFCSKAPKKKNYENFYPKEKKEVPKGNDKKYESKDNSNANTEDSGNFQEAFMKQVQNLVTPLLLMGLFLTSFSFGPREQKQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVRNTPLNQTDNELAQGTQPAIGSGGQYKYYFNIGSVESFEEKLEEAQEALGIYSHDFVPVTYSSEVVWYQELMRFAPTLLLLGSLLYMGRRMQGGIGVGGSGGGKGARGIFNIGKAPVTKVDKNAKNKIYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQCSPSIVFIDEIDAIGRARRGSFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPEILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSPRLAALTPGFAGADIANVCNEAALIAARGEGTQVTMEHFEAAIDRIIGGLEKRNKVISKLERRTVAYHEAGHAVSGWFLEHVEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKLTYAQVAVYGFSDKVGLLSFPPTEGSYEFSKPYSSKTAAIIDSEVRDWVDKAYKHTIQLIEEHKEQVTEIAELLLEKEVLHQDDLLRVLGERPFKATELTNYDRFKQGFIEEEEKVVESTVDTPEEGGGSSPLEPQVVPT* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0505 810 MobiDBLite consensus disorder prediction 95 125 - -
Gso12g0505 810 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Gso12g0505 810 MobiDBLite consensus disorder prediction 95 118 - -
Gso12g0505 810 Pfam AAA+ lid domain 522 561 IPR041569 -
Gso12g0505 810 Pfam Peptidase family M41 576 757 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso12g0505 810 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 32 809 - -
Gso12g0505 810 SUPERFAMILY FtsH protease domain-like 576 765 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso12g0505 810 SMART AAA_5 356 495 IPR003593 -
Gso12g0505 810 Gene3D - 146 259 - -
Gso12g0505 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 566 IPR027417 -
Gso12g0505 810 Coils Coil 228 248 - -
Gso12g0505 810 CDD AAA 357 493 - -
Gso12g0505 810 Pfam FtsH Extracellular 142 244 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Gso12g0505 810 PANTHER ATP-DEPENDENT PROTEASE 32 809 - -
Gso12g0505 810 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 260 759 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso12g0505 810 Gene3D - 310 493 IPR027417 -
Gso12g0505 810 MobiDBLite consensus disorder prediction 786 810 - -
Gso12g0505 810 Gene3D Peptidase M41 576 777 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso12g0505 810 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso12g0505 810 Pfam ATPase family associated with various cellular activities (AAA) 361 492 IPR003959 GO:0005524|GO:0016887
Gso12g0505 810 Gene3D - 494 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0505 Gso-Chr12 4496158 4502101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0505 1 810 Miscellaneous Gene Families AT2G29080 74.725 0.0 1180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0505 K08956 - gmx:100806656 1548.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0505 12 4496158 4502101 Gso11g1168 11 10493811 10499587 GST