Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1168 ATGATTTTTTCAAGGATTGCGCGCTCCGTTTCGCGTTCGCCTCGCGCTAGAAATTTTTTGCACGGTGATGGGAGATTGGGAACCCATGTCGGAGTGCCACGGACGAATGCGTATTCTGAAGGAGCCGAGAGGGTATTAGGATTTGCTAGGGGCTACGTGTCTTCTGCCAGAGCTCTTAGTAATGGCTTCGTTTCCAATTTGCCTGATTTTAAATCTGTTGCAGCAAACCCTAGGATTCGCCGATTGTTTTGCAGCGAAGCTCCGAAGAAGAAGAATTATAAGAACTTCTATCCCAAGGAAAAGAAGGAAGTTCCGAAGGGAAACGACAAGAAACATGAGTCCAAAGATAATTCACATGCAAACACCGAGAATAGTGGAAATTTTAAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAATCACGCCATTATTATTGGGGATGGGGCTATTTCTTACATCCTTTTCGTTTGGTCATCGTGAACAAGAGGAGATCAGCTTTCAGGAGTTTAAAAACAAGCTTTTGGAACCAGGATTAGTAGACCATATTGTTGTCTCAGATAAATCAGTTGCCAAAGTATATGTAAGGAACACTCCCCGCAACCAAATAGATAATGAAGTAGTCCAAGAGACCCTACCTGCAAAGGGATCTGGAGGCCAGTATAAATATTATTTCAATATTGGAAGTGTTGAGTCTTTTGAGGGGAAGCTAGAGGAAGCGCAAGAAGCTCTGGGCATTGACTCTCATGATTTTGTGCCTGTAACATATTCTGAGAGGTCTACATTCCAGGAAATGACGAAGGTTGCTCTAACACTGTTGTTTTTGTTATCTATCGGGCTTATGGGGGCGAGAATGCAAGGTCAACTTGGTTTTGGTGGCAGTGGCGGCAGTAAGGGTGCACGTGGAATATTCAACATAGGAAAAGCCCATACTAAAGTAGACAAAAATGCCAAAAACAAGGTCTATTTTAAAGATGTTGCTGGTTGTGATGAGGCGAAGCAAGAAATTATGGAGTTTGTCCACTTCCTCAAGAACCCAAAGAAATATGAAGAACTCGGTGCAAAGATTCCAAAAGGTGCTCTCTTGGCCGGTCCTCCAGGCACAGGAAAAACCCTTTTAGCAAAAGCTACAGCAGGGGAGTCTGGTGTACCCTTTCTTTGTTTATCTGGTTCTGATTTCATGGAAATGTTTGTTGGTGTTGGACCATCTAGGGTGAGAAACTTGTTTCAGGAAGCAAGACAGTGTTCACCTAGTATCATATTTATTGATGAGATTGATGCAATTGGTCGATCAAGGGGGCGTGGTGGTTTTTCTGGTGCAAATGATGAACGTGAAAGTACTTTAAATCAGCTGTTGGTGGAGATGGATGGTTTTGGAACCACTTCTGGAGTTGTTGTGTTGGCAGGAACAAATAGGCCTGATATCTTAGACAAAGCTCTTCTTAGGCCTGGGCGATTTGACCGCCAGATAACAATTGACAAACCTGATATTAAAGGTCGTGACCAGATATTTCAGATCTACTTGAAGAAAATCAAACTTGATCACGAGCCTTCATATTATTCTCAAAGGCTTGCAGCCCTTACACCTGGATTTGCTGGAGCAGACATTGCTAATGTCTGCAATGAAGCTGCTCTGATTGCTGCAAGAGGTGAAGGAACACAAGTGACAAAGGAACATTTTGAGGCAGCCATTGATAGGATCATTGGTGGCTTGGAAAAGAGGAACAGGGTAATAAGCAAGCTGGAAAGGCGTACTGTTGCCTACCATGAAGCAGGCCATGCTGTTGCAGGTTGGTTCTTGGAACATGCCGAGCCCTTGTTGAAAGTAACTATTGTTCCACGTGGCACCGCCTCTCTTGGGTTTGCTCAATATGTTCCCAGTGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGGCACTTGGTGGTCGGGCTTCTGAGCAGGTTCTTATAGGGAGAATCTCAACAGGAGCACAAAATGACTTGGAAAAAGTGACCAAGATGACGTATGCCCAAGTAGCAGTTTATGGTTTTAGCGACAAAGTGGGGCTCCTCTCCTTCCCTCCAACTGAGGGCTCATATGAGATTTCCAAACCATACAGCAGCAAAACTGCTGCAATCATCGATAACGAAGTGCGTGATTGGGTGAACAAAGCATATGAACATACGGTTCAGCTAATCAAGGAACACAAGGAGCAAGTGGCTCAAATTGCAGAGTTGCTGCTTGAAAAAGAAGTACTTCACCAGGACGACTTGCTTCGAGTTTTGGGCGAGCGGCCGTTCAAGGTCACTGAACCCACCAATTATGATAGATTTAAGCAAGGTTTTATAGAGGAAGAGGAAAAGGTTGCAGAAAGCACCATAGATACGCCGGAGAAAGGTGGTGGGTCTTCACCTTTAGAGCCCCAGGTTGTTCCCGCATAG 2433 0.4423 MIFSRIARSVSRSPRARNFLHGDGRLGTHVGVPRTNAYSEGAERVLGFARGYVSSARALSNGFVSNLPDFKSVAANPRIRRLFCSEAPKKKNYKNFYPKEKKEVPKGNDKKHESKDNSHANTENSGNFKEAFMKQVQNLITPLLLGMGLFLTSFSFGHREQEEISFQEFKNKLLEPGLVDHIVVSDKSVAKVYVRNTPRNQIDNEVVQETLPAKGSGGQYKYYFNIGSVESFEGKLEEAQEALGIDSHDFVPVTYSERSTFQEMTKVALTLLFLLSIGLMGARMQGQLGFGGSGGSKGARGIFNIGKAHTKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLAGPPGTGKTLLAKATAGESGVPFLCLSGSDFMEMFVGVGPSRVRNLFQEARQCSPSIIFIDEIDAIGRSRGRGGFSGANDERESTLNQLLVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARGEGTQVTKEHFEAAIDRIIGGLEKRNRVISKLERRTVAYHEAGHAVAGWFLEHAEPLLKVTIVPRGTASLGFAQYVPSENLLMTKEQLFDMTCMALGGRASEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPTEGSYEISKPYSSKTAAIIDNEVRDWVNKAYEHTVQLIKEHKEQVAQIAELLLEKEVLHQDDLLRVLGERPFKVTEPTNYDRFKQGFIEEEEKVAESTIDTPEKGGGSSPLEPQVVPA* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1168 810 Pfam ATPase family associated with various cellular activities (AAA) 360 492 IPR003959 GO:0005524|GO:0016887
Gso11g1168 810 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 785 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso11g1168 810 Gene3D - 147 260 - -
Gso11g1168 810 Pfam Peptidase family M41 575 757 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso11g1168 810 ProSitePatterns AAA-protein family signature. 463 481 IPR003960 GO:0005524|GO:0016887
Gso11g1168 810 CDD AAA 356 493 - -
Gso11g1168 810 SMART AAA_5 355 495 IPR003593 -
Gso11g1168 810 Gene3D - 304 492 IPR027417 -
Gso11g1168 810 MobiDBLite consensus disorder prediction 94 119 - -
Gso11g1168 810 Pfam FtsH Extracellular 141 248 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Gso11g1168 810 PANTHER ATP-DEPENDENT PROTEASE 27 810 - -
Gso11g1168 810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 566 IPR027417 -
Gso11g1168 810 Pfam AAA+ lid domain 522 561 IPR041569 -
Gso11g1168 810 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 27 810 - -
Gso11g1168 810 MobiDBLite consensus disorder prediction 94 125 - -
Gso11g1168 810 Gene3D Peptidase M41 576 777 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso11g1168 810 Gene3D - 494 570 - -
Gso11g1168 810 SUPERFAMILY FtsH protease domain-like 576 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gso11g1168 810 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 262 759 IPR005936 GO:0004176|GO:0004222|GO:0016020
Gso11g1168 810 MobiDBLite consensus disorder prediction 783 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1168 Gso-Chr11 10493811 10499587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1168 1 809 Miscellaneous Gene Families AT2G29080 72.473 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1168 K08956 - gmx:100806468 1569.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1168 11 10493811 10499587 Gso11g1168 11 10493811 10499587 ECH
Gso12g0505 12 4496158 4502101 Gso11g1168 11 10493811 10499587 GST