Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0498 ATGTTGTCTGAATTGGGAAGAAGACCTATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAATTGGAGAAGGAGATAGGGATGTTACTTCGTGAGCAACGCAGACAAGAGGCTGATGATCGTGAGCGAGAGCTTAATATTTTTAGGAGTGGATCGGCGCCTCCAACTGTGGACGGTTCTTTGAGTGCCGTTGGAGGGTTGTTTGCTGGTGGTGGTGGTGGTGGTGCTCCTGCTGCCTTTTCAGAGTTTCGAGGAACGAAGGATGTGAATGGGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTACTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGATTTCAACAAAGACTTAAAGGTGGAGCTTCTGCTCTAGGTGGAATTGGAGATAGGAGGAAAGTAAACAGGACTGATGATAATGCTGGAAGATCGCTTTTTGCTACCCCACCAGGTTTTAACATGAGGAAACAAGAGAGTGAGGTGGATAATGAAAAAACAAGAGGTTCGGCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAGAAGAGCTTTGCAGAAATTTTTCAGGATGATTTGGGGCATAATACCTCTATCGGATGCCTTCCTTCCCGTCCAGCCAGTCGTAATACATTTGATGACACTGATATCATTAGTTCTGCTGAAGCAGAGTTGGCTCATGTTCAAGGATCATCTGCAGCCCAAAATGTTGGCTTACCAGCTTCATATTCTTATGCTGTTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCTATTGGTGGCGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGCCAATCCAGATGCATTTAATGGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGCAAACCATTTGCCATCACAGGTTGAATCAGATGTAGATAGTCATCAGAGATATCTTTTTGGTAGGCTAGGTGGTCAAGATCATGGGAAGCAACAGGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAGCAGCAGGAGTGGGTCAGGTCTCAACAATCCATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACCGTTCCTTCCAATAACTCATATTTCAAAGGATCGCCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACTTCAGTACCAGCCTTTAGATGGTACAAATTCATCATTTACTAACTACGGTATGAGTGGCTATGCTGGAAATCCAGCACTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCAGCCCCTCGAATGGACTCGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCAAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCCATGTATCTTCAGTACCTGAGGACACCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTGGGCAATTCATACATGAATTTGCTTGAGCTTCAGAAAGCTTATCTTGGGTCTGTCCTCTCACCTCAGAAATCCCAATACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCCCCTGCTCATGGTTATTATGGAAATGCTGCATATGGTGGCGGGTTGTCTTACCCAGGAAGTCCTATGGCAAACTCTGTTGTGTCCACTTCTCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATAATGGGAACATTGATGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTGTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCGGATCAATATGGGAGTCGATTTATTCAACAAAAGCTAGAAACAGCTACTACAGAAGAAAAAAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAGAAAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGGCACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATTGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAATGTTATGCGCTGTGTACGTGATCAGAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTTCCTGAAGATGCAATCCACTTTATTGTGTCAACATTTTTTGATCAAGTTGTGACACTCTCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTGCTGGAACACTGCAAAGACCCTACGACACAACAGAAAGTTATGGATGAAATATTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGCCTCATGAACGTTCTTCTATCATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACCTTTGGTGGTCCTTCTGAGCGCCAATTACTAGTGTGTGAGATGCTTGGCACCACAGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTAGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGCGAGCTGATTCTTTACCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATTGTCGCCCGTGTGGAGAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCTGCTTAG 3105 0.4441 MLSELGRRPMLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVDGSLSAVGGLFAGGGGGGAPAAFSEFRGTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGASALGGIGDRRKVNRTDDNAGRSLFATPPGFNMRKQESEVDNEKTRGSAEWGGDGLIGLPGLGLSKQKSFAEIFQDDLGHNTSIGCLPSRPASRNTFDDTDIISSAEAELAHVQGSSAAQNVGLPASYSYAVAVGSSLSRSTTPDPQLVARAPSPCITPIGGGRAIASDKRAIANPDAFNGVSSGINESADLVAALSVMNLSADDVLDGANHLPSQVESDVDSHQRYLFGRLGGQDHGKQQAYLKKSESAHLQNSSKSSRSGSGLNNPSLDRQVELQKSTVPSNNSYFKGSPTSHFSRGGSMPLQYQPLDGTNSSFTNYGMSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPRMDSRILGGGLASGAAAPSDVHNLGRMGNQIQGSALQAPFVDPMYLQYLRTPEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSVLSPQKSQYNVPLGGKSGSSPAHGYYGNAAYGGGLSYPGSPMANSVVSTSPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDNGNIDDESFASSLLEEFKSNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQKRELANKLLGHVLALSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIHFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCKDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVCEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILYRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQAPPQPA* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0498 1034 MobiDBLite consensus disorder prediction 1 25 - -
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 738 771 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 965 991 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 774 807 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 885 916 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 846 881 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 920 952 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 702 736 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Pumilio-family RNA binding repeat 817 840 IPR001313 GO:0003723
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 842 878 IPR001313 GO:0003723
Gso12g0498 1034 Pfam Nucleic acid binding protein NABP 288 697 IPR012940 -
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 734 769 IPR001313 GO:0003723
Gso12g0498 1034 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1026 - -
Gso12g0498 1034 CDD Pumilio 694 1014 IPR033712 GO:0003723
Gso12g0498 1034 SUPERFAMILY ARM repeat 681 1015 IPR016024 -
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 915 950 IPR001313 GO:0003723
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 698 733 IPR001313 GO:0003723
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 806 841 IPR001313 GO:0003723
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 879 914 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 806 841 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 957 992 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 770 805 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 915 950 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 734 769 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 842 878 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 879 914 IPR001313 GO:0003723
Gso12g0498 1034 SMART pum_5 698 733 IPR001313 GO:0003723
Gso12g0498 1034 MobiDBLite consensus disorder prediction 383 440 - -
Gso12g0498 1034 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1026 - -
Gso12g0498 1034 Gene3D - 678 1024 IPR011989 -
Gso12g0498 1034 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 678 1018 IPR033133 GO:0003723
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 770 805 IPR001313 GO:0003723
Gso12g0498 1034 MobiDBLite consensus disorder prediction 141 189 - -
Gso12g0498 1034 ProSiteProfiles Pumilio RNA-binding repeat profile. 951 992 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0498 Gso-Chr12 4411399 4418534 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0498 K17943 - gmx:100779564 1908.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0498 12 4411399 4418534 Gso11g1161 11 10390045 10397209 GST