Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1161 ATGTTGTCTGAATTGGAAAGAAGACCAATGCTTGGGAGTAACGAGGGTTCTTTTGGTGATGAACTGGAGAAGGAGTTAGGGATGTTGCTTCGTGAGCAACGAAGACAGGAGGCTGATGATCGCGAGCAAGAGCTTAATATTTATAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTGAGTGCTGTTGGAGGGTTGTTTGGTGGTGCCGCTGGTGCTCCTGTCGCCTTTTCGGGGTTTCAAGGGACTAAGGATGTGAATTTGATTGCTTCTGAGGAAGAGCTTAGGTCTGATCCAGCGTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCACCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAAAGACTTAGAGGTGGGGCCTCAGTTCTAGGTGGAATTGGAGATAGGAGGAAAGTGAGCAGGACTGATGACAACAGTGGAAGATCACCTTTTTCTACCCCACCAGGTTTTAATATGAGGAAACAAGAGGGTGAGGTGGATAATGAAGAAACAAGAGGTTCCTCCGAGTGGGGTGGTGATGGACTGATTGGTTTGCCTGGACTAGGGCTGAGCAAACAAAAGAGCTTTGCTGAAATTTTTCAGGAAGATTTAGGGCATATTACCTCTATCGCATGCCTTCCTTCTCATCCAGCCAGTCGAGATGCATTTGATGACAATGATATCACTAGTTCTGCTGAAGCAGAGTTGGCTCATGCATGCCGCGAGTCCATGGCCACTGATGCACTAAGGTCTGGATCAAATGTTCAAGGATCATCTGCAGCCCAAAATGTTGTCCCACCAGCTTCATATTCCTATGCTGCTGCAGTAGGATCTTCCTTGTCAAGAAGCACTACTCCTGATCCACAACTTGTTGCTAGGGCTCCCAGTCCCTGCATCACGCCTATGGGTGGTGGCAGAGCCATTGCTTCTGACAAGAGAGCTATTGTCAGTCCAGATGCATTTAATGGTGTTTCATCTGGCGTCAATGAGTCAGCAGATCTTGTGGCTGCATTGTCAGTGATGAACTTGTCAGCAGATGATGTGTTAGATGGTGAAAACCATTTTCCATCACAGGTTGAATCAGATGTTGATAATCACCAGAGATATCTTTTTGGTAGGCAAGGTAGTCAAGATCATGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCACACTTGCAAAATTCAAGTAAGAACAACAGGAGTGGGTCAGATCTCAACAATCTATCCTTGGATAGGCAGGTTGAGCTACAAAAGTCTACTGTTCCTTCCAATAACTCATATTTCAAAGGATTGTCTACCTCCCATTTTAGTAGAGGAGGAAGTATGCCACCCCAGTACCAGCCTTTAGATAGTACAAATTCATCATTTGGTAACTATGGTCTTAGTGGCTATGCTGGAAATCCAGCGTTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTTGCTGCAGCATCAGCAATGGCATCCCCTGGAATGCGCTCGAGAATTCTTGGAGGTGGTTTGGCTTCTGGAGCTGCTGCTCCATCTGATGTGCATAATATTGGTAGGATGGGAAATCAAATTCCAGGCAGTGCTCTTCAGGCTCCTTTTGTTGATCCAATGTATCTTCAGTACCTGAGGACATCTGAGTTTGCTGCAGCACAACTTGCTGCTCTCAATGACCCCTCTGTGGACAGGAACTACTTAGGCAATTCATACATGAATTTACTTGAGCTTCAGAAAGCTTATCTTGGGTCTATCCTCTCGCCTCAGAAATCCCAATACAATGTACCGCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATGGTTATTATGGAAATCCTGCATATGGTGTTGGAATGTCTTACCCAGGAACTCCAATTGCAAACTCTGTTGTGTCCACTTCGCCAGTTGGATCTGGAAGTCCTGTTAGGCACAATGAGCTGAATATGCGTTTTGCTTCTGGATTGAGGAATTTAGCTGGGGTCATGGGACCTTGGCATGTAGATACTGGGAATATTGATGAAAGTTTTGCTTCTTCTCTGTTGGAAGAGTTTAAAAGCAATAAAACAAAGTGTTTTGAGCTTTCTGAAATTGTTGGTCATGTTGTTGAATTCAGTGCGGATCAATACGGGAGTCGATTTATTCAACAAAAGCTTGAAACAGCTACTACAGAAGAAAAAAAGATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCATCCCAAAGAAGAGAATTAGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGTGTCATCCAGAAGGCCATCGAAGTTGTTGATCTGGATCAGAAGATAGAGATGGTTCAAGAGCTTGATGGTAACGTCATGCGCTGTGTACGTGATCAGAATGGTAATCACGTCATTCAAAAGTGTATTGAATGTGTCCCTGAAGATGCAATCGACTTTATTGTCTCGACATTTTTTGATCAAGTTGTGACACTATCAACCCATCCATATGGTTGCCGGGTGATACAGAGAGTGCTGGAACATTGCGAAGACCCTACAACACAGCAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGCTAGCTCAGGATCAGTATGGAAACTACGTTGTTCAGCATGTGCTGGAACATGGGAAGTCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTAGTAGAGAAATGTTTGACCTTTGGAGGTCCTTCTGAGCGCCAATTACTAGTGAATGAGATGCTTGGCACCACCGATGAAAATGAGCCTCTTCAGGCGATGATGAAAGATCAATTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACTTGTGATGATCAACAACGTGAGCTGATTCTTTCCCGAATTAAGGTTCATTTGAATGCATTGAAAAAGTACACCTATGGAAAGCACATCGTCACGCGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATAGCTGCTCAGGCTCCTCCTCAACCTGCTTAG 3144 0.4408 MLSELERRPMLGSNEGSFGDELEKELGMLLREQRRQEADDREQELNIYRSGSAPPTVEGSLSAVGGLFGGAAGAPVAFSGFQGTKDVNLIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLRGGASVLGGIGDRRKVSRTDDNSGRSPFSTPPGFNMRKQEGEVDNEETRGSSEWGGDGLIGLPGLGLSKQKSFAEIFQEDLGHITSIACLPSHPASRDAFDDNDITSSAEAELAHACRESMATDALRSGSNVQGSSAAQNVVPPASYSYAAAVGSSLSRSTTPDPQLVARAPSPCITPMGGGRAIASDKRAIVSPDAFNGVSSGVNESADLVAALSVMNLSADDVLDGENHFPSQVESDVDNHQRYLFGRQGSQDHGKQHAYLKKSESAHLQNSSKNNRSGSDLNNLSLDRQVELQKSTVPSNNSYFKGLSTSHFSRGGSMPPQYQPLDSTNSSFGNYGLSGYAGNPALASLMTNQLGTGNLPPLFENVAAASAMASPGMRSRILGGGLASGAAAPSDVHNIGRMGNQIPGSALQAPFVDPMYLQYLRTSEFAAAQLAALNDPSVDRNYLGNSYMNLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHGYYGNPAYGVGMSYPGTPIANSVVSTSPVGSGSPVRHNELNMRFASGLRNLAGVMGPWHVDTGNIDESFASSLLEEFKSNKTKCFELSEIVGHVVEFSADQYGSRFIQQKLETATTEEKKMVYQEIMPHALALMTDVFGNYVVQKFFEHGLASQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIEMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAIDFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCEDPTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKSHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPSERQLLVNEMLGTTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVTRVEKLVAAGERRIAAQAPPQPA* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 747 782 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 783 818 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 819 854 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 928 963 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 711 746 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 747 782 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 970 1005 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 855 891 IPR001313 GO:0003723
Gso11g1161 1047 SMART pum_5 892 927 IPR001313 GO:0003723
Gso11g1161 1047 CDD Pumilio 707 1027 IPR033712 GO:0003723
Gso11g1161 1047 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 691 1031 IPR033133 GO:0003723
Gso11g1161 1047 MobiDBLite consensus disorder prediction 397 417 - -
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 964 1005 IPR001313 GO:0003723
Gso11g1161 1047 Gene3D - 691 1037 IPR011989 -
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 819 854 IPR001313 GO:0003723
Gso11g1161 1047 MobiDBLite consensus disorder prediction 398 417 - -
Gso11g1161 1047 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 36 1039 - -
Gso11g1161 1047 MobiDBLite consensus disorder prediction 137 189 - -
Gso11g1161 1047 Pfam Nucleic acid binding protein NABP 302 710 IPR012940 -
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 855 891 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 715 749 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 830 853 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 898 929 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 751 784 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 859 894 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 787 820 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 978 1007 IPR001313 GO:0003723
Gso11g1161 1047 Pfam Pumilio-family RNA binding repeat 933 966 IPR001313 GO:0003723
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 892 927 IPR001313 GO:0003723
Gso11g1161 1047 SUPERFAMILY ARM repeat 694 1028 IPR016024 -
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 928 963 IPR001313 GO:0003723
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 711 746 IPR001313 GO:0003723
Gso11g1161 1047 PANTHER PUMILIO HOMOLOG 1-RELATED 36 1039 - -
Gso11g1161 1047 MobiDBLite consensus disorder prediction 1 22 - -
Gso11g1161 1047 ProSiteProfiles Pumilio RNA-binding repeat profile. 783 818 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1161 Gso-Chr11 10390045 10397209 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1161 K17943 - gmx:100802749 1972.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0498 12 4411399 4418534 Gso11g1161 11 10390045 10397209 GST