Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0490 ATGCAGATAGAAGTAAGATCTGAGTGCTTCCGAAACTTATTTGTGCAAACTATAGACTTCGAAATATTGGGGAGGAAAGCCACTCTCGGGAAGATAAGAAAAAAATCACAGTCCCATCGCATTAGGAGCCACCAGTCCACAACACAGCACAGGTGGACTCTTCAGGGCATGACAGCTCTCGTCACTGGTGGCACTCGCGGAATAGGACACGCCATTGTGGAGGAATTGACGGGGTTTGGAGCCAGAGTGCATACCTGTGCCAGGAATGAACATGATCTCACTAAGTGCCTTAAGAAATGGAATGATTCCGGTTTTGATGTCACTGGCTCAGTTTGTGATGTCTCAGTTCCACACCAGAGGGAGGCACTCATGGAATCAGTTTCCTCTCTCTTCCACGGAAAACTCAACATCCTTATAAACAATGTAGGGACAAACATTCGGAAACCGGTGACAGATTTCACAAGTGCAGAGTTTTCCACTCTTATTGATACCAATTTGGGATCCGTCTTTCATTTATGCCAACTTGCATATCCACTTTTGAAAGCATCGGGAATGGGAAATGTTGTGTTTATCTCGTCTGTTTCTGGTTTTTTCTCACTCAAGTCAATGTCTGTTCAAGGAGCAATGAAGAGTGCAATTAATCAACTTACAAGAAATCTAGCTTGTGAGTGGGAAAAAGACAATATAAGGAGTAATGCAGTGGCACCTTGGTACATCAAAACTTCATTGGTAGAGCAGGTGCTCAGCAACAAAGACTATCTGGAAGAAGTGTACTCCAGAACCCCACTAAGGCGCCTAGGAGATCCAGCAGAAGTCTCTTCTCTTGTTGCCTTTCTCTGCTTACCAGCATCATCATACATCACTGGCCAGATTATTTGTATTGATGGAGGAGTGTCTGTGAATGGTTTCCACCCAACAACATAG 924 0.4426 MQIEVRSECFRNLFVQTIDFEILGRKATLGKIRKKSQSHRIRSHQSTTQHRWTLQGMTALVTGGTRGIGHAIVEELTGFGARVHTCARNEHDLTKCLKKWNDSGFDVTGSVCDVSVPHQREALMESVSSLFHGKLNILINNVGTNIRKPVTDFTSAEFSTLIDTNLGSVFHLCQLAYPLLKASGMGNVVFISSVSGFFSLKSMSVQGAMKSAINQLTRNLACEWEKDNIRSNAVAPWYIKTSLVEQVLSNKDYLEEVYSRTPLRRLGDPAEVSSLVAFLCLPASSYITGQIICIDGGVSVNGFHPTT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0490 307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 55 300 IPR036291 -
Gso12g0490 307 Pfam Enoyl-(Acyl carrier protein) reductase 65 299 - -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 58 75 IPR002347 -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 133 144 IPR002347 -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 227 244 IPR002347 -
Gso12g0490 307 PRINTS Glucose/ribitol dehydrogenase family signature 262 282 IPR002347 -
Gso12g0490 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 144 IPR002347 -
Gso12g0490 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Gso12g0490 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Gso12g0490 307 PANTHER TROPINONE REDUCTASE 32 306 IPR045000 GO:0016491
Gso12g0490 307 Gene3D - 37 303 - -
Gso12g0490 307 PANTHER TROPINONE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC 32 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0490 Gso-Chr12 4347409 4352058 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0490 51 303 Miscellaneous Gene Families AT2G29290 61.265 1.66e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0490 K08081 - gmx:100799534 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0490 12 4347409 4352058 Gso11g1151 11 10334684 10337762 GST