Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0477 ATGGTTCAGTATAATTTTAAGAAGATCACTGTGGTGCCAAATGGGAAGGATGTCGTCGACATCATCCTCTCTCGCACCCAGCGTCAGACACCAACCGTTGTGCACAAAGGATATGCTATTTCACGGCTTCGCCAATTCTACATGCGCAAAGTGAAGTATACTCAGCAGAATTTTCATGACAAGCTCTCCACAATAATCGACGAGTTCCCCAGGCTCGACGATATTCATCCTTTCTATGGCGATCTCCTCCATGTGCTCTACAATAAGGACCACTACAAGCTTGCTCTTGGCCAAATTAACACTGCCAGGAATCTCATTGGTAAGATTGCCAAAGACTATGTGAAGTTGTTGAAGTATGGTGACTCGCTGTATCGGTGCAAGTGTCTTAAGGTGGCTGCTCTTGGCCGCATGTGCACTGTGATCAAGAGGGTTGGCCCGAGTTTGGCTTATCTAGAACAGGTCAGACAGCACATGGCTAGGCTTCCCTCTATTGATCCAAATACGAGGACTATCTTGATCTGTGGATATCCCAATGTTGGCAAGAGCTCGTTCATTAACAAGATTACTAGAGCTGATGTGGATGTGCAGCCCTATGCTTTCACTACAAAGTCTCTCTTTGTGGGTCATACTGATTATAAATACCTGAGGTACCAAGTAATTGATACACCAGGGATTTTGGACAGGCCTTTTGAAGATCGTAATATTATTGAGATGTGCAGTATCACTGCTCTAGCACATTTGAGAGCCGCGATATTGTTTTTCTTGGACGTGTCTGGGTCTTGTGGTTACAGTATTGCTCAGCAGGCAGCTCTGTTTCACAGCATCAAGTCTTTGTTTATGAACAAGCCGTTGATTATAGTCTGCAACAAGACTGACTTGCAGCCACTTGAGGGGATATCTGAGGAAGACATGAAGTTGGTCAATGAGATGAAAGCGGAAGCCTTGAAGACTCTAGTTGGTCAAGGTGGTGAGCCTACAGACAATAACAGTGTATTGTTGACCATGAGCACTTTGACAGAAGAAGGGGTAATTGCTGTGAAAAATGCAGCATGTGAGAGGTTATTGGATCAGAGGGTGGAGATAAAGATGAAATCAAAGAAAATTAATGACTGCTTGAACAGGTTTCATGTTGCAGTACCAAAGCCTCGTGACCAGAAGGAAAGGCCTCCATGTATTCCTCAAGCAGTTTTAGAAGCTAAAGCTAAGCAAGCAGCTGAGAAGGAAAAGAGAAAAACTGAAAAGGATCTGGAGGATGAGAATGGTGGGGCGGGTGTATACTCAATGAACTTGAGAAAGAATTACATTTTGGCCGATGATGAATGGAAAGAGGATGTGCTGCCAGAAATTTTGGATGGACACAATGTGTATGATTTCATTGATCCTGATATTCTGCATAGGGTTGAAGAGTTGGAAAGAGAAGAAGGGATGAGACAGGAAGAAGCTGAGGATGGTGATTTTGAGATTGATGGAACTGAATTGACGCCCGAGCAGCAAGCAGCTTTAGCTGAGATTAGGAAAAAGAAAAGCTTGCTCATCCAGCAGCATAGGATCAAAAAGAGCAATGCAGAGAATCGGCCAACTGTTCCAAGGAAGTTTGATAAGGACAAGCAGTTCACCTCAGAAAGAATGGGAAGGCAATTGTCATCTTTGGGGCTTGATCCCACTTTGGCAATTAAGAGAATGCGCAGCAGATCTGCTTCTAGAGGTCGGAAAAGGGAAAGATCGCCTGAAATGAGAAGTGCTGATGGTATGGATATTGATGGTGATACACCTAGCAAAAAACAGCGTCTGAGTAGATCACTGTCACGGTCCAGGTCAGTGTCACGCCCACCACATGAAGTTGTGCCTGGAGAAGGTTACAAGGATTCTGCTCAAAAGGTCAAGGCAATTAAACTTGCAAAGAAATCTGTCAAGAAGAGAAACAAGGATGCCCGTCGTGGAGAAGCTGATAGAGTCATACCTAATCTGAAGCCCAAGCACTTGTTTTCTGGGAAGCGTTCCAATGGAAAAACTGAGAGACGCTAG 2025 0.4435 MVQYNFKKITVVPNGKDVVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHDKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLIGKIAKDYVKLLKYGDSLYRCKCLKVAALGRMCTVIKRVGPSLAYLEQVRQHMARLPSIDPNTRTILICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAILFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLIIVCNKTDLQPLEGISEEDMKLVNEMKAEALKTLVGQGGEPTDNNSVLLTMSTLTEEGVIAVKNAACERLLDQRVEIKMKSKKINDCLNRFHVAVPKPRDQKERPPCIPQAVLEAKAKQAAEKEKRKTEKDLEDENGGAGVYSMNLRKNYILADDEWKEDVLPEILDGHNVYDFIDPDILHRVEELEREEGMRQEEAEDGDFEIDGTELTPEQQAALAEIRKKKSLLIQQHRIKKSNAENRPTVPRKFDKDKQFTSERMGRQLSSLGLDPTLAIKRMRSRSASRGRKRERSPEMRSADGMDIDGDTPSKKQRLSRSLSRSRSVSRPPHEVVPGEGYKDSAQKVKAIKLAKKSVKKRNKDARRGEADRVIPNLKPKHLFSGKRSNGKTERR* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0477 674 Pfam NOGCT (NUC087) domain 410 463 IPR012973 -
Gso12g0477 674 Pfam Nucleolar GTP-binding protein 1 (NOG1) 236 292 IPR010674 GO:0005525
Gso12g0477 674 CDD NOG 169 355 - -
Gso12g0477 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 312 IPR027417 -
Gso12g0477 674 Coils Coil 402 422 - -
Gso12g0477 674 Gene3D - 3 161 - -
Gso12g0477 674 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 674 - -
Gso12g0477 674 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 169 355 IPR031167 GO:0005525
Gso12g0477 674 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 1 1 674 - -
Gso12g0477 674 PRINTS GTP1/OBG GTP-binding protein family signature 171 191 IPR006073 GO:0005525
Gso12g0477 674 PRINTS GTP1/OBG GTP-binding protein family signature 192 210 IPR006073 GO:0005525
Gso12g0477 674 PRINTS GTP1/OBG GTP-binding protein family signature 219 234 IPR006073 GO:0005525
Gso12g0477 674 PIRSF NOG1 1 674 IPR024926 -
Gso12g0477 674 MobiDBLite consensus disorder prediction 570 596 - -
Gso12g0477 674 Gene3D - 162 373 IPR027417 -
Gso12g0477 674 MobiDBLite consensus disorder prediction 518 541 - -
Gso12g0477 674 MobiDBLite consensus disorder prediction 515 674 - -
Gso12g0477 674 Pfam NOG1 N-terminal helical domain 6 165 IPR041623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0477 Gso-Chr12 4252261 4255500 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0477 K06943 - gmx:100784033 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0477 12 4252261 4255500 Gso11g1135 11 10224814 10227713 GST