Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0454 ATGATAAAGCCTCAAGTGTATCAATCACAGAACACCAACCAAACCCTCTTGTTTCTGCAGAGGCCATCCCTTCACAGTATTAGGAGTAGTATTCCACTGTGGTTGGGGAACAAAGTGCAGAGGCAAAAAAAACTTAACCACCTCGTTCTGGTTTCTCGCAACGTTGAAACTAATTCTACTACTTCTTCAACAACAACAACAACAACAACAGATACTCATACAGATGAGAGTAGAGTGAAGGTTAAGGCCATAGTTAAGGTGAAAGTAACTGCGGGTGGTTTCTTTTCAAGTCTGAGGTTAGACAGAGGAATCGATGATATAACAGATTTGCTCGGTAAATCTCTCCTCTTAGAGCTTGTTAGCTCTGAGCTTGACCCCGTGACGGGACTAGAGAAGGAAACACTGAAAGCGTATGCACACAAAGCAGGAAATGGTGAGGAGTCGGTTAAGTACGAAGCTAAATTTGAAGTTCCAAATGATTTTGGAGAGGTTGGTGCTGTTCTTGTTGAGAATGAGCATCACAAGGAGATGTTCCTTGAAACCATCCACCTCGATGTCTTCCCTGAGGGTCCTATTCATTTTCATTGTGCCTCTTGGGTTCACTCCAAGTTCGATAATCCCACCAAAAGGGTCTTCTTCTCCAACAAGTGTTTCTTACCGCAAGAGACACCGGGTGGTTTAAGAAGACTAAGAGCAAAAGAATTGAGTAATCTGCGAGGCAATGGAGAAGGAGAACGCAAGAGCTTTGAAAGAATATACGATTACGACATATACAATGACATTGGAGATCCTGATAAAAGCCTTGAACTTCAGAGACCTCCTTTAGGAGGTAACGAGAGACCTTATCCTAGACGTTGTCGAACTGGTCGTCCACATAGTGAAGCAGATCCATTGTCAGAGAAAAGAAGTAGAAAGTTTTACGTTCCAAGGGACGAGTGCTTCTCAGAGGTGAAGCAGTTGACGTTCTCAACCAAGACATTACACTCGGTGTTACTTATATTGCTTCCATCTCTGGGGAAAATTATCAAAGAAAAGGACCTTGCATTTTCCTACTTCGACGACATAGATTCACTCTTCAGCCATGGACTTGACTTGCCTCCTGAAGAAACCGAGAAGGGATTCCTAGGAAAAATCATGCCTAGGCTAGTCAAATCCATTTCTGGTGACAGGGCACACGTGCTTCGCTTCGAGACCCCAGAGACTATGAGCAGGGACAGATTTTTCTGGTTTAGGGATGAGGAATTTGCTAGACAGACTGTTGCTGGTCTCAACCCATATAGCATACGATTGGTCACAGAATGGCCATTGAAAAGTAAACTTGACCCAGAAAAATATGGTCCACCAGAATCAGCAATCACCTCAGAAATTATCAACAAAGAGATTGGAGGCATAATGTCTGTAGAAAAGGCGATTGAAGAAAAGAAGCTGTTCATGTTAGACTACCATGACGTACTTTTACCCTACGTCAACAAAGTACGCAAACTCAAGGGGAAAACACTGTATGGTTCACGAACTTTGTTCTTTCTAAACCCAGAGGGGACACTGAGGCCTCTAGCCATTGAGCTTACTCGACCACCATCATTGTCAAATAAAACAGGCCAATGGAAGCAAGTTTTCACGCCTTCTTGGCACTCAACCAGTGTTTGGCTCTGGAGGTTAGCCAAGGCTCATGTTCTTGCACATGACTCTGGCTATCACCAACTTGTTAGTCATTGGTTAAGAACTCACTGTGCGACAGAGCCGTATGTTATTGCAACCAACAGACAACTTAGTGAGATGCACCCCATAAACAAATTGCTACACCCTCATTTCCGTTACACAATGGAGATTAACGCTCTTGCACGGGAAGCACTTATTAATGCTGATGGCACAATTGAGAGCTCATTTGCACCAGGAAAGTATGCCTTAGAGATTAGCTCCGCTGCTTATGCTCTCGAATGGCGGTTTGACAAGCAGGCACTACCAGCAGATCTAATTAGAAGGGGAATTGCTGTTGAAGATCCATTTTCTCCACATGGCTTAAAGCTTACCATTCAAGACTATCCTTTTGCCAATGATGGACTCCTTCTGTGGGATGCTATAAAGCTATGGGTCACTGACTATGTCAACCACTACTACCCTGAACCAAGTCTTGTAGAGTCAGATGAAGAGCTGCAGGCATGGTGGACAGAGATTAGAACACTTGGTCATGCTGACAAAAAAGATGAGCCATGGTGGCCACATCTTAAAACCCCAAAAGACCTCATTGGAATCCTCAACACAATCATATGGGTAACTTCTGGTCACCATGCAGCTGTGAACTTTGGGCAATATGTTTATGGGGGATATTTCCCAAATAGGCCTACAATTGCCAGGACTAAAATGCCCTCAGAGGACCCTACAGAAGAAGAGTGGAAAAAGTTCATTGAAAAGCCTGAAAGAGCACTTCTGAAGTGCTTTCCTTCACAACTTCAAGCAACTAGAGTCATGGCTGTCTTGGACATACTCTCAACTCATTCACCAGATGAGGAATACATAGGAGAAAAGATGGAACCATCATGGGGTGAAGATCCTGTCATAAAGGCTTCCTTTGAAAGATTTAGAGAGAGACTGAAGAAACTAGAAACACTGATTGATGAGAGGAATGGAAACACAAAGTTGAAGAACAGAAATGGAGCTGGCATTGTACCGTACGAGCTTTTGAAACCTTTCTCAAAGCCAGGTGTGACTGGAATGGGGGTTCCCTGTAGTATATCTATTTAA 2742 0.4351 MIKPQVYQSQNTNQTLLFLQRPSLHSIRSSIPLWLGNKVQRQKKLNHLVLVSRNVETNSTTSSTTTTTTTDTHTDESRVKVKAIVKVKVTAGGFFSSLRLDRGIDDITDLLGKSLLLELVSSELDPVTGLEKETLKAYAHKAGNGEESVKYEAKFEVPNDFGEVGAVLVENEHHKEMFLETIHLDVFPEGPIHFHCASWVHSKFDNPTKRVFFSNKCFLPQETPGGLRRLRAKELSNLRGNGEGERKSFERIYDYDIYNDIGDPDKSLELQRPPLGGNERPYPRRCRTGRPHSEADPLSEKRSRKFYVPRDECFSEVKQLTFSTKTLHSVLLILLPSLGKIIKEKDLAFSYFDDIDSLFSHGLDLPPEETEKGFLGKIMPRLVKSISGDRAHVLRFETPETMSRDRFFWFRDEEFARQTVAGLNPYSIRLVTEWPLKSKLDPEKYGPPESAITSEIINKEIGGIMSVEKAIEEKKLFMLDYHDVLLPYVNKVRKLKGKTLYGSRTLFFLNPEGTLRPLAIELTRPPSLSNKTGQWKQVFTPSWHSTSVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYVIATNRQLSEMHPINKLLHPHFRYTMEINALAREALINADGTIESSFAPGKYALEISSAAYALEWRFDKQALPADLIRRGIAVEDPFSPHGLKLTIQDYPFANDGLLLWDAIKLWVTDYVNHYYPEPSLVESDEELQAWWTEIRTLGHADKKDEPWWPHLKTPKDLIGILNTIIWVTSGHHAAVNFGQYVYGGYFPNRPTIARTKMPSEDPTEEEWKKFIEKPERALLKCFPSQLQATRVMAVLDILSTHSPDEEYIGEKMEPSWGEDPVIKASFERFRERLKKLETLIDERNGNTKLKNRNGAGIVPYELLKPFSKPGVTGMGVPCSISI* 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0454 913 ProSiteProfiles PLAT domain profile. 94 214 IPR001024 GO:0005515
Gso12g0454 913 Gene3D - 219 317 - -
Gso12g0454 913 MobiDBLite consensus disorder prediction 264 301 - -
Gso12g0454 913 Gene3D PLAT/LH2 domain 49 218 - -
Gso12g0454 913 PANTHER LIPOXYGENASE 24 912 IPR000907 GO:0016702|GO:0046872
Gso12g0454 913 SUPERFAMILY Lipoxigenase 219 913 IPR036226 -
Gso12g0454 913 Gene3D - 408 543 - -
Gso12g0454 913 ProSitePatterns Lipoxygenases iron-binding region signature 2. 593 603 IPR020834 GO:0016702|GO:0046872
Gso12g0454 913 ProSitePatterns Lipoxygenases iron-binding region signature 1. 566 580 IPR020833 GO:0016702|GO:0046872
Gso12g0454 913 Gene3D - 545 912 - -
Gso12g0454 913 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 80 217 IPR036392 GO:0005515
Gso12g0454 913 PRINTS Lipoxygenase signature 548 565 IPR013819 GO:0016702|GO:0046872
Gso12g0454 913 PRINTS Lipoxygenase signature 566 583 IPR013819 GO:0016702|GO:0046872
Gso12g0454 913 PRINTS Lipoxygenase signature 586 606 IPR013819 GO:0016702|GO:0046872
Gso12g0454 913 SMART LH2_4 83 215 IPR001024 GO:0005515
Gso12g0454 913 Pfam PLAT/LH2 domain 148 213 IPR001024 GO:0005515
Gso12g0454 913 PRINTS Plant lipoxygenase signature 184 202 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 210 231 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 249 265 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 281 300 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 346 367 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 394 410 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 433 452 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 501 525 IPR001246 GO:0016491
Gso12g0454 913 PRINTS Plant lipoxygenase signature 826 840 IPR001246 GO:0016491
Gso12g0454 913 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 217 913 IPR013819 GO:0016702|GO:0046872
Gso12g0454 913 MobiDBLite consensus disorder prediction 283 301 - -
Gso12g0454 913 Gene3D - 318 406 IPR027433 -
Gso12g0454 913 PANTHER LIPOXYGENASE 24 912 - -
Gso12g0454 913 Pfam Lipoxygenase 226 896 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0454 Gso-Chr12 3993718 4001756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0454 157 913 Acyl Lipid Metabolism Gene Families AT3G45140 60.053 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0454 K00454 - gmx:100797626 1776.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0454 12 3993718 4001756 Gso11g1109 11 9939941 9950990 GST