Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1109 ATGCTTATGCAACAAGTTCATGTATCAAATCCAAGTTCATCTTGTCTCATCCTTCAAAAGCCATGCCTCCGTGACATTACTCACCCTTCTTTTCAGCTTTGGTCAAGGCCATCATCGTTCCCAAACCAAAGGAAGCAAAAAAGGGTTTCTTATGGATGCAGGAGTAATGGCAACAAAATCAAAGCTGTGGCTGTGACTGAAGCTGAAAACAAATCAGTGAAAGTTAAAGCCACAATCACTGTTCAGCCAACCGTTGGTGGGATTTTCTCAGAAATGGCTATAGAGAGAGGGTTGGATGATATAAAGGATTTGCTAGGTCAGTCAATTCTCTTGGAGCTTGCTAGCACTGAGCTTGATCCCAAGACGAAATTAGAGAAGGAAACTATCAAAGATTATGCCCACAGTAAGCATCGATCAGCACAAGAGGTTAAATACGAGGGTGAATTTGAAGTGCCAGACAACTTTGGAGAAGTTGGGGCCATTTTTGTGACGAATGAGCATCACAGGGAAATGTTCATCAAAGACATTGTCTTGGATGGTTTCCTCTTGGGTCCTGTTAAATTTACCTGCGAATCTTGGGTTCACTCCAAGTATGATAACCCTGCTAAGAGAGTGTTTTTCTCCAACAAGTCATATTTGCCATCTGAAACACCAGAAGGAGTGAAGAGGTTAAGAGAAGAGGAGCTAGAACAGTTACGTGGCAATGGGCAAGGTGAACGCAAGAGCTTTGAGAGAATATACGATTACGATGTGTACAATGATCTTGGAGATCCTGATAGCAGCGACGACCTCAAGAGACCCGTTCTTGGTGGCAATCAACATCCATACCCAAGGCGTTGCAGAACAGGAAGGCCTCGTTGCGACAAAGATCCATTATCGGAGAAAAGAAGTAGTACGGTTTACGTGCCTAGAGACGAAAGCTTCTCGGAAGTGAAGCAACTAACGTTTTCGACAAAGACGTTATCGTCGGGGTTGAAAGCGCTCGTGCCGGCGCTGAAGACATTGATAGTTGACAAGAATCTAGGGTTTCCTGTGTTCTCGGCCATAGATGACCTTTTCGATGAAGGCCTTTACTTGCCTCCTCTAAAAGGTATCAGGAGTATCTTGCCCAGGCTCGTTAGGCATATTAAGGATATTCAGGAAGACATTCTCCTTTTTGATCCTCCCGCAACAATGAACAAGGACAGATTTTTCTGGTTAAGGGACGAAGAATTTGGAAGACAGACTCTCGCGGGTCTTAACCCTTGCTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTTGATCCCGAAATTTATGGCCCTGCGGAATCAGCCATCACTACCGAAATAGTTGAGCGGGAAATAAGAGGGTTCAATACGGTGGAAGAGGCCATAAAACAGAAGAAACTGTTCATCCTGGACTACCACGATTTGTTGTTGCCATTAGTAAAGGATGTGAGAGAACTTGAAGGCACAACGCTATATGGATCAAGGGCATTGTTCTTCCTAACCCGCGAAGGCACATTGAGACCTCTGGCTATTGAGCTGACTCGGCCACCAATGGACGGAAAACCGCAATGGAAGGAAGTCTTCACGCCTTGCTGGCACTCAACTGGTGTCTGGCTTTGGAGGCTAGCCAAACTTCATATCCTCGCCCATGACTCTGGTTACCATCAACTTGTTAGTCACTGGCTACGAACTCACTGTGCAACAGAGCCTTACATCCTTGCAACAAACAGGCAACTGAGTGCAATGCACCCAATCTACAGACTACTGCATCCCCATTTCCGTTACACCATGGAAATCAACGCGCTTGCTCGCGAGGCCCTGATAAACGGCGACGGAATAATCGAAAGCAGTTTCTCTCCGGGGAAGCACTCCATCCTCTTAAGCTCAATCGCCTACGACCAACAATGGCAATTCGACCTGCAATCCCTCCCAAAGGACCTCATCAGCAGAGGCATGGCCGTGGAGGACCCCACCGCACCCCACGGCCTCAAGCTAATCATCGAAGACTACCCTTACGCCAACGACGGCCTCGTCCTCTGGGACGCCCTCAAAACCTGGTTCACCGAATACGTGAACCTCTACTACGCCGACGATGGTTCTATAGTGTCGGACACTGAGCTCCAAGCCTGGTGGGAAGAGATCAGAACCGTTGGACACGGGGATAAAAAAGACGAACCTTGGTGGCCTGTCTTAAAAACAAAGTTAGATTTGATTGACATTGTGACAACAATTGCGTGGACGACTTCCGGCCACCACGCGGCTGTGAACTTCGGACAATTCTCCTTTGCGGGGTATTTCCCAAACAGACCCACCATTGCAAGAAACAACATGCCCTCGGAGGACCCTTCGGACGCCGAATGGGAGCTGTTCTTGGAGAAGCCGGAGGTGATTATGCTGAAGTGCTTCCCGTCGCAGATTCAGGCCACCACCGTGATGACGGTGCTGGACATTCTGTCAAACCACTCGCCGGACGAGGAGTATCTCGGGGAGACAGTGGAGCCGGCGTGGGAGGAGGAGCCGCTTGTGAAGGCCGCGTTTGAGAAGTTTAGAGGGAAGTTGATTGAGCTTGAAGGGATTATCGACGCCAGGAATGCGGATAGGACCAGGAGGAACCGGAACGGTGCCGGGATTGTGCCCTATGAACTTCTCAAGCCTTCTTCGGAGCCTGGTGTCACAGGAAAGGGAGTTCCTTATAGCATCTCTATTTGA 2706 0.4845 MLMQQVHVSNPSSSCLILQKPCLRDITHPSFQLWSRPSSFPNQRKQKRVSYGCRSNGNKIKAVAVTEAENKSVKVKATITVQPTVGGIFSEMAIERGLDDIKDLLGQSILLELASTELDPKTKLEKETIKDYAHSKHRSAQEVKYEGEFEVPDNFGEVGAIFVTNEHHREMFIKDIVLDGFLLGPVKFTCESWVHSKYDNPAKRVFFSNKSYLPSETPEGVKRLREEELEQLRGNGQGERKSFERIYDYDVYNDLGDPDSSDDLKRPVLGGNQHPYPRRCRTGRPRCDKDPLSEKRSSTVYVPRDESFSEVKQLTFSTKTLSSGLKALVPALKTLIVDKNLGFPVFSAIDDLFDEGLYLPPLKGIRSILPRLVRHIKDIQEDILLFDPPATMNKDRFFWLRDEEFGRQTLAGLNPCCIQLVTEWPLKSKLDPEIYGPAESAITTEIVEREIRGFNTVEEAIKQKKLFILDYHDLLLPLVKDVRELEGTTLYGSRALFFLTREGTLRPLAIELTRPPMDGKPQWKEVFTPCWHSTGVWLWRLAKLHILAHDSGYHQLVSHWLRTHCATEPYILATNRQLSAMHPIYRLLHPHFRYTMEINALAREALINGDGIIESSFSPGKHSILLSSIAYDQQWQFDLQSLPKDLISRGMAVEDPTAPHGLKLIIEDYPYANDGLVLWDALKTWFTEYVNLYYADDGSIVSDTELQAWWEEIRTVGHGDKKDEPWWPVLKTKLDLIDIVTTIAWTTSGHHAAVNFGQFSFAGYFPNRPTIARNNMPSEDPSDAEWELFLEKPEVIMLKCFPSQIQATTVMTVLDILSNHSPDEEYLGETVEPAWEEEPLVKAAFEKFRGKLIELEGIIDARNADRTRRNRNGAGIVPYELLKPSSEPGVTGKGVPYSISI* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1109 901 Gene3D - 534 900 - -
Gso11g1109 901 CDD PLAT_LH2 73 209 IPR042057 -
Gso11g1109 901 Gene3D - 312 396 IPR027433 -
Gso11g1109 901 Pfam Lipoxygenase 221 884 IPR013819 GO:0016702|GO:0046872
Gso11g1109 901 Gene3D PLAT/LH2 domain 51 212 - -
Gso11g1109 901 Pfam PLAT/LH2 domain 140 207 IPR001024 GO:0005515
Gso11g1109 901 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 211 901 IPR013819 GO:0016702|GO:0046872
Gso11g1109 901 PRINTS Plant lipoxygenase signature 178 196 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 204 225 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 243 259 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 275 294 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 340 361 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 384 400 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 423 442 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 491 515 IPR001246 GO:0016491
Gso11g1109 901 PRINTS Plant lipoxygenase signature 814 828 IPR001246 GO:0016491
Gso11g1109 901 Gene3D - 213 311 - -
Gso11g1109 901 ProSitePatterns Lipoxygenases iron-binding region signature 2. 581 591 IPR020834 GO:0016702|GO:0046872
Gso11g1109 901 SUPERFAMILY Lipoxigenase 213 901 IPR036226 -
Gso11g1109 901 MobiDBLite consensus disorder prediction 281 296 - -
Gso11g1109 901 ProSitePatterns Lipoxygenases iron-binding region signature 1. 554 568 IPR020833 GO:0016702|GO:0046872
Gso11g1109 901 PANTHER LIPOXYGENASE 22 899 IPR000907 GO:0016702|GO:0046872
Gso11g1109 901 ProSiteProfiles PLAT domain profile. 88 208 IPR001024 GO:0005515
Gso11g1109 901 MobiDBLite consensus disorder prediction 257 296 - -
Gso11g1109 901 PRINTS Lipoxygenase signature 536 553 IPR013819 GO:0016702|GO:0046872
Gso11g1109 901 PRINTS Lipoxygenase signature 554 571 IPR013819 GO:0016702|GO:0046872
Gso11g1109 901 PRINTS Lipoxygenase signature 574 594 IPR013819 GO:0016702|GO:0046872
Gso11g1109 901 SMART LH2_4 73 209 IPR001024 GO:0005515
Gso11g1109 901 PANTHER LIPOXYGENASE 22 899 - -
Gso11g1109 901 Gene3D - 398 530 - -
Gso11g1109 901 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 58 212 IPR036392 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1109 Gso-Chr11 9939941 9950990 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1109 151 901 Acyl Lipid Metabolism Gene Families AT3G45140 61.060 0.0 977
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1109 K00454 - gmx:100787202 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1109 11 9939941 9950990 Gso11g1109 11 9939941 9950990 ECH
Gso12g0454 12 3993718 4001756 Gso11g1109 11 9939941 9950990 GST