Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0453 ATGGTAATGGCATTGAAGATGTTTCCGCTGCTCTGCGTTCTGTCTCTTTTTGCTACCTCGTCTATTATCACCATCACTCATTCCAAGACTGTTCCACCCATTCTTGACGTTACTAATTTCAACCGAACCAGTTTCCCGCATGGCTTTGTTTTCGGGACAGCGTCAGCTGCATACCAGTATGAAGGTGCTGCAAGGGAAGGTGGAAAAGGACCGAGTATATGGGATACTTTCACTCATAAATACCCAGAAAAAATAAAAGACCACAGTAATGCAGATGTAACGGTAGACGAATATCATCGGTATAAGGAGGATATTGGAATCATGAAGTACATGAATTTGGATGCTTATAGATTCTCCATTGCTTGGTCTAGGGTACTACCAAAAGGAAAGCTTAGTGCAGGTGTAAACAAAGAAGGAATAAACTACTACAACAACCTCATCAATGAGCTACTGGCTAATGGTCTGCAACCATATGTGACCCTTTTTCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATGGTGGTCTTTTAAGCCCTCACATTGTAGATGATTTTAGGGACTATGCTGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAACATTGGATTACTTTGAACGAACCGAGCACTGTAAGCATGAATGGCTATGCAGTGGGAAGCCATGCACCAGGTCGGTGTTCTGATTGGTTAAAAATGAATTGCACAGGTGGTGATTCAGGAACTGAGCCTTATTTGAGTTCACACTATCAACTTCTTTCTCATGCTGCTGCTGCCAATCTGTATAAGACCAAGTATCAGACATCTCAAAAAGGTATAATAGGGATTACCTTGAATACTGACTGGTTTTTGCCGGCCTCAGAAAAGATAACAGATCGAGACGCTGCGCGTCGAGCCCTTGACTTCAGGTTTGGATGGTATATGGATCCAATCACCTTTGGTGACTATCCAAAAAGCATGCGATCTTTGGTGGGAAACCGGCTACCAAAGTTCTCCAAAGAAGAAACCAGGCAACTTAAGGGGTCATTTGATTTTCTGGGCCTAAACCATTACGCAACCGTTTATGCTGGCCATGCGCCTCACCTACGTGGTCCCAGACCAACCCTACTAACTGATCCTCTAATTTATGTTACAAATCAGCGTGACGGCAGGGTCCTTTGTCCATACGCTGCTTCTAACTGGTTATGCGTTTATCCACGAGGACTCCGACAACTGCTGCTTTACATCAAGAAGCAATACAACAGCCCCGTAATTTACATTACTGAAAGTGGTTATGATGAGCTCAACGATCCAACACTATCACTTGAAGAAAGCATGATAGATACTTACAGAGTTGATTACTTTTATCGTTATCTTTATTATCTTCAAATGGCAATCAGGGATGGTGTAAATGTCAAGGGATACTTTGTATGGTCATTGCTGGATAACATGGAGTGGAGTGCTGGCTATACTGTGCGATTTGGATTGGTCTTTGTGGATTACAAAGATGGCTTGAAAAGATACCTCAAACTCTCGGCACAATGGTTCAAGAATTTTCTCAACAAATCTTAG 1554 0.4266 MVMALKMFPLLCVLSLFATSSIITITHSKTVPPILDVTNFNRTSFPHGFVFGTASAAYQYEGAAREGGKGPSIWDTFTHKYPEKIKDHSNADVTVDEYHRYKEDIGIMKYMNLDAYRFSIAWSRVLPKGKLSAGVNKEGINYYNNLINELLANGLQPYVTLFHWDVPQALEDEYGGLLSPHIVDDFRDYAELCFKEFGDRVKHWITLNEPSTVSMNGYAVGSHAPGRCSDWLKMNCTGGDSGTEPYLSSHYQLLSHAAAANLYKTKYQTSQKGIIGITLNTDWFLPASEKITDRDAARRALDFRFGWYMDPITFGDYPKSMRSLVGNRLPKFSKEETRQLKGSFDFLGLNHYATVYAGHAPHLRGPRPTLLTDPLIYVTNQRDGRVLCPYAASNWLCVYPRGLRQLLLYIKKQYNSPVIYITESGYDELNDPTLSLEESMIDTYRVDYFYRYLYYLQMAIRDGVNVKGYFVWSLLDNMEWSAGYTVRFGLVFVDYKDGLKRYLKLSAQWFKNFLNKS* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0453 517 SUPERFAMILY (Trans)glycosidases 31 515 IPR017853 -
Gso12g0453 517 Pfam Glycosyl hydrolase family 1 43 516 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 PRINTS Glycosyl hydrolase family 1 signature 343 357 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 PRINTS Glycosyl hydrolase family 1 signature 419 427 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 PRINTS Glycosyl hydrolase family 1 signature 442 453 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 PRINTS Glycosyl hydrolase family 1 signature 463 480 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 PRINTS Glycosyl hydrolase family 1 signature 487 499 IPR001360 GO:0004553|GO:0005975
Gso12g0453 517 Gene3D Glycosidases 25 516 - -
Gso12g0453 517 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 33 516 - -
Gso12g0453 517 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 49 63 IPR033132 -
Gso12g0453 517 PANTHER GLYCOSYL HYDROLASE 33 516 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0453 Gso-Chr12 3982877 3987770 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0453 3 516 Glycoside Hydrolase AT5G44640 50.874 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0453 - K01188 gmx:100806123 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0453 12 3982877 3987770 Gso11g1107 11 9914226 9918579 GST