Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0449 ATGGCATTCAACGGTTATTTCCTTTTGGGCCTCATAGTTCTTGTTCTTGTTAGGTCTTCCAAAGTTACATGCGAATTAGAAACAGATACAGTTTCACCTATTATTGACATTTCACTGAGTCGGAAGAGTTTCCCAGAAGGGTTCATCTTTGGGGCGGGATCTTCCTCGTACCAGTTCGAAGGTGCAGCAAAGGAAGGTGGTAGAGAACCAAGTGTATGGGATACCTTCACCCATAATTATCCAGAAAAGATCATGGATAGAAGCAACGGAGACGTGGCCATTGACTCATATCACCACTACAAGGAAGATGTTGGAATGATGAAGGATATGAATTTGGATTCATATAGATTTTCCATTTCTTGGTCAAGGATTCTCCCAAAAGGAAAACTAAGTGGAGGTATAAATCGAGAAGGAATAAACTATTACAACAATCTTATCAATGAGCTAGTGGCTAATGGTATACAACCACTTGTGACTCTATTTCATTGGGATCTTCCCCAAGCCTTAGAAGATGAGTATGGCGGATTCTTAAGTCCACGCATAGTGAAAGATTTTCGGGACTATGCGGAACTTTGCTTCAAGGAATTTGGTGATAGGGTGAAACATTGGGTTACTTTGAATGAGCCATGGAGTTACAGCCAAAATGGCTATGCAAATGGACGAATGGCACCAGGACGTTGTTCTGCTTGGATGAATTTGAACTGTACTGGTGGTGATTCTTCAACGGAGCCTTATTTGGTTACACACCATCAACTTCTTGCTCATGCAGCAGTTGTTCGTGTGTACAAGACCAAGTATCAGGCCTTTCAAAAAGGTGTGATAGGCATAACCTTGGTAGCTAATTGGTTTTTGCCGCTCAGAGATACCAAATCTGATCAAAAGGCTACAGAAAGAGCAATTGACTTCATGTATGGATGGTTTATGGATCCATTAACATCCGGAGACTATCCAAAAAGCATGCGATCTCTTGTGAGAACAAGATTGCCAAAGTTTACAACAGAGCAATCCAAACTACTTATCGGTTCATTTGATTTTATTGGCTTAAACTATTACTCTACAACATATGCCTCTGATTCACCTCAGCTAAGCAATGCCAGACCTAGCTACTTGACAGATTCTCTTGTCACTCCTGCATATGAACGTGATGGGAAACCTATAGGAATAAAGATTGCTTCTGATTGGTTGTATGTTTATCCAAGAGGAATTCGTGACCTTTTATTATATACCAAGGAAAAGTACAACAATCCTTTGATTTACATCACTGAAAATGGTATAAATGAGTATAATGAACCAACATTATCACTTGAAGAATCTCTTATGGATACCTTCAGAATTGATTATCATTATCGTCATCTCTTTTATCTTCAATCTGCAATTAAGAATGGCGTAAATGTGAAGGGATATTATGTGTGGTCTTTGTTCGACAATTTTGAATGGTCTTCAGGCTATACATCACGTTTTGGAATGATTTTTGTGGATTACAAAAATAATTTGAAGAGATATGAGAAGCTCTCTGCACAGTGGTTCAAAAATTTTCTCAAGAAAGAAACAAGACTATATAGCTCTACTAAATAA 1575 0.386 MAFNGYFLLGLIVLVLVRSSKVTCELETDTVSPIIDISLSRKSFPEGFIFGAGSSSYQFEGAAKEGGREPSVWDTFTHNYPEKIMDRSNGDVAIDSYHHYKEDVGMMKDMNLDSYRFSISWSRILPKGKLSGGINREGINYYNNLINELVANGIQPLVTLFHWDLPQALEDEYGGFLSPRIVKDFRDYAELCFKEFGDRVKHWVTLNEPWSYSQNGYANGRMAPGRCSAWMNLNCTGGDSSTEPYLVTHHQLLAHAAVVRVYKTKYQAFQKGVIGITLVANWFLPLRDTKSDQKATERAIDFMYGWFMDPLTSGDYPKSMRSLVRTRLPKFTTEQSKLLIGSFDFIGLNYYSTTYASDSPQLSNARPSYLTDSLVTPAYERDGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYNEPTLSLEESLMDTFRIDYHYRHLFYLQSAIKNGVNVKGYYVWSLFDNFEWSSGYTSRFGMIFVDYKNNLKRYEKLSAQWFKNFLKKETRLYSSTK* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0449 524 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 520 - -
Gso12g0449 524 PANTHER GLYCOSYL HYDROLASE 3 520 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 ProSitePatterns Glycosyl hydrolases family 1 active site. 418 426 IPR018120 -
Gso12g0449 524 Pfam Glycosyl hydrolase family 1 41 516 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 48 62 IPR033132 -
Gso12g0449 524 PRINTS Glycosyl hydrolase family 1 signature 342 356 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 PRINTS Glycosyl hydrolase family 1 signature 418 426 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 PRINTS Glycosyl hydrolase family 1 signature 441 452 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 PRINTS Glycosyl hydrolase family 1 signature 462 479 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 PRINTS Glycosyl hydrolase family 1 signature 486 498 IPR001360 GO:0004553|GO:0005975
Gso12g0449 524 Gene3D Glycosidases 28 522 - -
Gso12g0449 524 SUPERFAMILY (Trans)glycosidases 39 514 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0449 Gso-Chr12 3945744 3948616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0449 6 518 Glycoside Hydrolase AT5G44640 53.307 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0449 - K01188 gmx:100802250 1085.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0449 12 3945744 3948616 Gso11g1102 11 9873262 9876432 GST
Gso15g0278 15 2535516 2540859 Gso12g0449 12 3945744 3948616 PCT