Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0447 ATGGCACATAACGGACATGTACTTGTACTTCTCATTGCTCTTGTTACCTCATTCATTATTATCACAGAAGGCGTTACTACCCCTAATCCTGAAATAGCATCTCTGAATCGGAATAGTTTCCCAACTGGCTTCATCTTTGGCACAGCATCCTCGGCATATCAATACGAAGGTGCAGCAAATGAGGGTGGTAGAGGACCAAGTATTTGGGATACCTTCACCCATAAATATCCAGATAAGATAAAGGATAGAGACAGTGGAGATGTAGCCATTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCCATATCTTGGTCTAGAATACTCCCGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATTGACTATTACAACAACCTTATCAATGAGCTACTAGCAAATGGTCTGAAACCATTTGTGACTCTTTTCCATTGGGATCTTCCCCAATCGTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGACCTTTGCTTCAAAGAATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAGCCATGGAGTTATAGCCAACATGGTTATGCAACAGGGGAAATGGCTCCTGGTCGATGTTCTGCTTGGATGAATCCTAATTGCAATGGTGGTGATTCTGCAACAGAACCTTATTTGGTCTCGCATCACCAACTTCTTGCTCATGCAGCAAGTGTTCATGTGTACAAGACCAAGTATCAGACATTTCAAAATGGTTTGATAGGCATAACCTTGAATGTTAATTGGTACGTGCCGTTCTCGGATAACAAACTTGATCACAAGGCTACTGAACGAGCTATTGACTTCCAGTATGGATGGTTTATGGATCCACTAACAACGGGAGATTATCCAAAAAACATGCGATTCTTAGTGAGAGCACGATTACCAAAGTTTACAAAAGAGCAATCCAAATTACTTATTGATTCTTTTGATTTTATTGGCATCAACTACTATTCCGCTTCTTATGCCTCAGATGCACCTCAACTAAGCAATGCCAAAATCAGCTACATAACAGATTCCCTTTCTAATTCCTCATTTGTACGTGATGGAAAACCCATTGGTCTAAACGTTGCTTCAAATTGGTTGTACGTTTATCCAAGAGGATTTCGAGACGTTTTGTTATACACTAAAAAGAAATACAACAATCCTTTAATTTATATTACAGAAAATGGTATAAATGAGTATGATGATCCATCACTATCACTTGAAGAATCTCTTCTTGATATTTATAGAATCGATTATCATTATCGTCATCTCTTTTATCTTCAAGAAGCAATCAAGAATGGTGTGAATGTAAAAGGGTATTTCGCATGGTCTTTGCTGGACAATTTCGAATGGCACTTAGGTTATACTGTGCGATTTGGAATGAATTTTATAGATTACAAAAATGACTTAAAAAGATACTCAAAACTTTCTGCATTATGGTTCAAGGATTTTCTCAAAATTGAAATCAAACTTGAGGAAGATTCCATGTAA 1563 0.3749 MAHNGHVLVLLIALVTSFIIITEGVTTPNPEIASLNRNSFPTGFIFGTASSAYQYEGAANEGGRGPSIWDTFTHKYPDKIKDRDSGDVAIDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPKGKLSGGINQEGIDYYNNLINELLANGLKPFVTLFHWDLPQSLEDEYGGFLSPRIVKDFQDYADLCFKEFGDRVKHWITLNEPWSYSQHGYATGEMAPGRCSAWMNPNCNGGDSATEPYLVSHHQLLAHAASVHVYKTKYQTFQNGLIGITLNVNWYVPFSDNKLDHKATERAIDFQYGWFMDPLTTGDYPKNMRFLVRARLPKFTKEQSKLLIDSFDFIGINYYSASYASDAPQLSNAKISYITDSLSNSSFVRDGKPIGLNVASNWLYVYPRGFRDVLLYTKKKYNNPLIYITENGINEYDDPSLSLEESLLDIYRIDYHYRHLFYLQEAIKNGVNVKGYFAWSLLDNFEWHLGYTVRFGMNFIDYKNDLKRYSKLSALWFKDFLKIEIKLEEDSM* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0447 520 PRINTS Glycosyl hydrolase family 1 signature 338 352 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 SUPERFAMILY (Trans)glycosidases 30 510 IPR017853 -
Gso12g0447 520 Pfam Glycosyl hydrolase family 1 37 510 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 1 515 - -
Gso12g0447 520 PANTHER GLYCOSYL HYDROLASE 1 515 IPR001360 GO:0004553|GO:0005975
Gso12g0447 520 Gene3D Glycosidases 25 511 - -
Gso12g0447 520 ProSitePatterns Glycosyl hydrolases family 1 active site. 414 422 IPR018120 -
Gso12g0447 520 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 44 58 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0447 Gso-Chr12 3928595 3932252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0447 7 509 Glycoside Hydrolase AT5G44640 55.556 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0447 - K01188 gmx:100792870 1073.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0447 12 3928595 3932252 Gso11g1101 11 9848463 9852301 GST