Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1101 ATGGCATATATACCTCTCATTGTTCTAGTTACCTCATTGATTACTATCACACAAGGCGTTATTACCCCTAATCCTGAAACAGCTTCTCTGAATCGGAATAGTTTCCCAACAGGCTTCATCTTTGGTACAGCATCCTCGGCATATCAGTACGAAGGTGGAGCAAATGAGGGTGGTAGAGGACCAAGCATTTGGGATACCTTCACCCATAAATATCCAGAAAAGATAAAAGACAGAGACAGTGGTGATGTAGCCGTTGATTCATATCATCGCTACAAGGAAGATGTTGGGATTATGAAGGATATGAATTTGGATGCTTACAGATTTTCTATTTCTTGGTCTAGAATACTCCCTGAAGGAAAGTTAAGTGGAGGTATAAATCAAGAAGGAATCGATTATTACAACAACCTTATCAATGAGCTACTAGCAAATGGTTTGAAACCATTTGTGACTCTTTTTCATTGGGATCTTCCCCAATCTTTAGAAGATGAGTATGGTGGCTTTTTAAGCCCTCGCATTGTGAAAGATTTTCAAGACTATGCAGACCTTTGCTTCAAGGAATTTGGAGATAGAGTAAAACATTGGATAACTTTGAATGAACCATGGAGTTATAGCCAACATGGTTATGCAACAGGGGAAATGGCACCAGGTCGATGTTCTGCTTGGGCGAATCCTAATTGCAATGGTGGTGATTCCGCAAGTGAACCTTATTTGGTCTCACATCACCAACTTCTTGCTCATGCGGCAAGTGTTCATGTGTACAAGACCAAGTATCAGACATTTCAAAATGGTTTGATAGGCATAACCTTGAATGTTAATTGGTACGTGCCGTTCTCGGATAACAAACTTGATCACAAGGCTACTGAACGAGCTATTGACTTCCAGTATGGATGGTTTATGGATCCACTAACAACGGGAGATTATCCAAAAAGCATGCGATTCTTAGTGAGAACACGTTTACCAAAGTTTACAAAGGAACAATCCAAATTACTTATTGATTCTTTTGATTTTATTGGCATAAACTACTATTCCACTTCTTATGCCTCCGATGCACCTCAACTAAAAAGCAATGCCAAAATCAGCTACCTAACAGATTCCCTTGCTAATTTTTCATTTGTGCGTGATGGAAAACCCATTGGTTTAAATGTTGCTTCAAATTGGTTGTACGTTTATCCAAGAGGATTTCGAGACCTTTTGTTATACACTAAAGAGAAATACAACAACCCTTTAATTTATATTACAGAAAATGGTATAAATGAGTATGATGATTCATCATTATCACTTGAGGAATCTCTTCTTGATATTTATAGAGTTGACTATCATTATCGTCATCTATTTTATCTTCGAGAATCAATTAAGAATGGTGTGAATGTAAAAGGATATTTTGCATGGTCTTTGCTCGACAATTTTGAATGGCACTTAGGTTACACTGTACGATTTGGAATGAATTTTGTAGATTACAAAAATGGCTTGGAAAGATACCCAAAACTTTCAGCATTATGGTTCAAGGATTTTCTCAAAATTGAAATCAAACTTCATGAAGATTCCATGCAATAA 1554 0.3719 MAYIPLIVLVTSLITITQGVITPNPETASLNRNSFPTGFIFGTASSAYQYEGGANEGGRGPSIWDTFTHKYPEKIKDRDSGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPEGKLSGGINQEGIDYYNNLINELLANGLKPFVTLFHWDLPQSLEDEYGGFLSPRIVKDFQDYADLCFKEFGDRVKHWITLNEPWSYSQHGYATGEMAPGRCSAWANPNCNGGDSASEPYLVSHHQLLAHAASVHVYKTKYQTFQNGLIGITLNVNWYVPFSDNKLDHKATERAIDFQYGWFMDPLTTGDYPKSMRFLVRTRLPKFTKEQSKLLIDSFDFIGINYYSTSYASDAPQLKSNAKISYLTDSLANFSFVRDGKPIGLNVASNWLYVYPRGFRDLLLYTKEKYNNPLIYITENGINEYDDSSLSLEESLLDIYRVDYHYRHLFYLRESIKNGVNVKGYFAWSLLDNFEWHLGYTVRFGMNFVDYKNGLERYPKLSALWFKDFLKIEIKLHEDSMQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1101 517 Gene3D Glycosidases 20 507 - -
Gso11g1101 517 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 5 511 - -
Gso11g1101 517 PRINTS Glycosyl hydrolase family 1 signature 333 347 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 PRINTS Glycosyl hydrolase family 1 signature 410 418 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 PRINTS Glycosyl hydrolase family 1 signature 433 444 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 PRINTS Glycosyl hydrolase family 1 signature 454 471 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 PRINTS Glycosyl hydrolase family 1 signature 478 490 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 Pfam Glycosyl hydrolase family 1 32 506 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 ProSitePatterns Glycosyl hydrolases family 1 active site. 410 418 IPR018120 -
Gso11g1101 517 PANTHER GLYCOSYL HYDROLASE 5 511 IPR001360 GO:0004553|GO:0005975
Gso11g1101 517 SUPERFAMILY (Trans)glycosidases 24 506 IPR017853 -
Gso11g1101 517 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 39 53 IPR033132 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1101 Gso-Chr11 9848463 9852301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1101 3 505 Glycoside Hydrolase AT5G44640 55.159 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1101 - K01188 gmx:100820528 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0447 12 3928595 3932252 Gso11g1101 11 9848463 9852301 GST