Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0422 ATGGCCAATGGCAACACTAGTCATCGCTTCAAGCTCTTGCTTTTCCTTCTAACTCTGCACTCTTCATTCGCTGAGATTTTCTTCGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGCTATCCGATTGGAAAAGGAGTGAAGGAAAAGCGGGTACCTTCAAGCACACAGCAGGAAAATGGTCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAATGACGCCAAGCATTTTGCCATATCTGCAAAGATACCCGAGCTAAGCAACAAGGACAGAACCCTGGTGCTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTAATTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGTTCACAGACAAAGAAGCTCCATCTTATACTATCATACCAGGGGCAGAATTACCCCATTAGAAAAGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCGGCTGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATCCCTGATCCAAAAGCCAAGAAGCCTGTTGAATGGGATGATGAAGATGATGGACTATGGAAGCCCCCGAAGATTCCCAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAACCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAATTGTGGATGAATTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGTGAAAGAAGGAGGAAGGAGAGGGATCATAAATATGGAAATAGGAGGCATCGTCGAAGGCCGGATCCCCGTGATATGGATGATTACCATGATGAACTTTGA 1257 0.428 MANGNTSHRFKLLLFLLTLHSSFAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPELSNKDRTLVLQYSIRFEQDIECGGGYIKLNSGYVNQKKFGGDTPYSLMFGPDICGSQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPVEWDDEDDGLWKPPKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQIVDEFMANNREAEKEAFEEAEKERRAREEEEAQRAREEGERRRKERDHKYGNRRHRRRPDPRDMDDYHDEL* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0422 418 PRINTS Calreticulin signature 105 123 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 PRINTS Calreticulin signature 131 147 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 PRINTS Calreticulin signature 220 233 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 PRINTS Calreticulin signature 248 270 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 PRINTS Calreticulin signature 286 305 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 PRINTS Calreticulin signature 319 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 MobiDBLite consensus disorder prediction 359 418 - -
Gso12g0422 418 Gene3D Calreticulin/calnexin, P domain 210 311 IPR009033 GO:0005509|GO:0005515
Gso12g0422 418 MobiDBLite consensus disorder prediction 248 268 - -
Gso12g0422 418 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 223 IPR013320 -
Gso12g0422 418 Coils Coil 356 394 - -
Gso12g0422 418 Pfam Calreticulin family 265 338 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 Pfam Calreticulin family 29 263 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 MobiDBLite consensus disorder prediction 224 271 - -
Gso12g0422 418 Gene3D - 25 381 - -
Gso12g0422 418 PIRSF Calreticulin 5 416 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 ProSitePatterns Calreticulin family signature 2. 135 143 IPR018124 GO:0005509
Gso12g0422 418 PANTHER CALRETICULIN-3 10 418 - -
Gso12g0422 418 MobiDBLite consensus disorder prediction 359 393 - -
Gso12g0422 418 MobiDBLite consensus disorder prediction 224 238 - -
Gso12g0422 418 PANTHER CALRETICULIN AND CALNEXIN 10 418 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Gso12g0422 418 MobiDBLite consensus disorder prediction 404 418 - -
Gso12g0422 418 SUPERFAMILY P-domain of calnexin/calreticulin 206 321 IPR009033 GO:0005509|GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0422 Gso-Chr12 3683740 3690355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0422 10 346 Miscellaneous Gene Families AT5G61790 35.516 5.31e-64 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0422 K08057 - gmx:100802428 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0422 12 3683740 3690355 Gso11g1074 11 9600335 9606968 GST