LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso11g1074	ATGGCCAATGGTAACAACATTAGTCATTTCTTCAAGCTCTTGCTTTTCCTTCTAACTTTCCACTCTTGTCTCGCTGAGATTTTCTTCCAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGCTATCCGATTGGAAAAGGAGCGAGGGAAAAGCGGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGGGATCCTGATGACAAAGGTCTTCAGACATATAATGACGCCAAGCATTTCGCCATATCTGCAAAGATACCGGAGCTTAGTAACAAGGACAGAACCCTGGTGGTGCAGTATTCTATTAGGTTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAGCTTCTTTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACTCCTTACAGTTTGATGTTTGGACCAGACTTATGTGGTTCACAGACAAAGAAGCTCCATCTTATACTATCATACCAGGGGCAGAATTACCCGATTAGAAAAGATCTGCAATGTGAAACGGATAAGTTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAATCGGGAAAGAGATTCTGGAAGCATGTACATGGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCGTCAGACTGGGATGATAGAGAGTACATTGAAGACCCTAATGATGTCAAACCAGAGGGATATGATTCAATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGTTGACTGGGATGACGAAGATGATGGACTATGGAAGCCCCCAAAGATTCCTAATCCAGCGTACAAAGGACCATGGAAATGCAAGAAAATCAAGAACCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTCGAGGATGATCCTGATCTGTATGTTCTCAAGCCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAATATCTTAATTTGTGATGACCCACAGTATGCAAAGCAAGTTGTGGATGAATATATGGCTAGCAACAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCAGGAAGACGAGGAGGCACGAAGAGCAAGAGAAGAGGGTGAAAGAAGGAGGAAGGAGAGGGATCATAAATATGGAAAAAGGAGGCATCGTCGAAGGCCGGATCCCCATGATATGGAGGATTACCATGATGAACTTTGA	1260	0.4333	MANGNNISHFFKLLLFLLTFHSCLAEIFFQERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPELSNKDRTLVVQYSIRFEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDLCGSQTKKLHLILSYQGQNYPIRKDLQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYMDWDILPPRKIKDVKAKKPSDWDDREYIEDPNDVKPEGYDSIPAEIPDPKAKKPVDWDDEDDGLWKPPKIPNPAYKGPWKCKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQVVDEYMASNREAEKEAFEEAEKERRAQEDEEARRAREEGERRRKERDHKYGKRRHRRRPDPHDMEDYHDEL*	420

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso11g1074	419	Pfam	Calreticulin family	266	339	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	Pfam	Calreticulin family	29	264	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	Gene3D	Calreticulin/calnexin, P domain	200	320	IPR009033	GO:0005509\|GO:0005515
Gso11g1074	419	ProSitePatterns	Calreticulin family signature 2.	136	144	IPR018124	GO:0005509
Gso11g1074	419	MobiDBLite	consensus disorder prediction	357	419	-	-
Gso11g1074	419	SUPERFAMILY	Concanavalin A-like lectins/glucanases	21	224	IPR013320	-
Gso11g1074	419	MobiDBLite	consensus disorder prediction	249	269	-	-
Gso11g1074	419	PIRSF	Calreticulin	5	418	IPR009169	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	ProSitePatterns	Calreticulin family signature 1.	104	119	IPR018124	GO:0005509
Gso11g1074	419	MobiDBLite	consensus disorder prediction	225	272	-	-
Gso11g1074	419	PANTHER	CALRETICULIN-3	9	419	-	-
Gso11g1074	419	Gene3D	-	26	381	-	-
Gso11g1074	419	MobiDBLite	consensus disorder prediction	357	393	-	-
Gso11g1074	419	PRINTS	Calreticulin signature	106	124	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PRINTS	Calreticulin signature	132	148	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PRINTS	Calreticulin signature	221	234	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PRINTS	Calreticulin signature	249	271	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PRINTS	Calreticulin signature	287	306	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PRINTS	Calreticulin signature	320	340	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	PANTHER	CALRETICULIN AND CALNEXIN	9	419	IPR001580	GO:0005509\|GO:0005783\|GO:0006457\|GO:0051082
Gso11g1074	419	MobiDBLite	consensus disorder prediction	225	239	-	-
Gso11g1074	419	SUPERFAMILY	P-domain of calnexin/calreticulin	207	322	IPR009033	GO:0005509\|GO:0005515
Gso11g1074	419	Coils	Coil	357	395	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso11g1074	Gso-Chr11	9600335	9606968	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso11g1074	9	347	Miscellaneous Gene Families	AT5G61790	35.678	6.40e-66	218

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso11g1074	K08057		-	gmx:100776524	798.119

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso11g1074	11	9600335	9606968	Gso11g1074	11	9600335	9606968	ECH
	Gso12g0422	12	3683740	3690355	Gso11g1074	11	9600335	9606968	GST