Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0399 ATGACAAACGCACACGGTGGCGCCATGTTAGTAGAGCATAAAACAAACAGCAACAGCGTACACAGACAAAAGTTCGGAGCCTTGTTGCACTCCGAAACGACGTCGCTTTACACCTCCAACCACGACGACGATGAATTCTCCTCCCATAATAACCAACGGCACAGCAGCAACAATGCCTCTCCCTACATCATGTCCCCATGGAACTACCAACCTAATGGCAATAACAATTCTTCTTCTTCTCCTTTCAATAAATCTCCGTGGCTATTGCCTTCTTCGCCGGCGATAAACCTCTTCCACCACCACCACCACCACCACGATAACGACCTCCCGGAAAACGGCCTCATTGGATCCCTCGTCCGCAAGGAGGGCCACATATATTCCCTTGCCGTTTCCGGCAACTTGCTATACACCGGCTCTGACAGCAAGAACATAAGAGTGTGGAAGGATCTCAAAGACTTCACGGGATTCAAATCAAGCAGCGGATTGGTGAAAACGATTGTTATTTCCGGCGGGAAAATCTTCACCGGCCACCAAGACGGGAAGATCAGAGTCTGGAAGGTTTCGTCGAAGAATCCGAGCAACCATAAACGCATCGGGAGCTTGCCGACGTTCAAAGAGTACGTGAAGAGTTCGATGAATCCGAAGAACTACGTCGAGGTTCGGCGGCACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGTCTGGACGAGGAGGAAGGCTTGTTGTACTCGGGGTCGTGGGACAAGACGCTCAAGGTGTGGCGCGTGGCGGATTCAAAGTGCTTGGAGTCGATTAGCGCGCACGACGACGCCGTGAACGCGGTGGCGGCGGCGTTCGGGGGTTGCGTGTTGACGGGCTCCGCGGACGGGACGGTGAAGATGTGGAGGAGGGAGAACCAGGGGAAGAAGTTCAAGCACGTTTTAGACCGTGTTTTGCTGAAGCGGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTTTAGCTACGGTGGTTTATTGCGGTTCTTCTGACGGGTTGGTCAATTTCTGGGAGCGTGACCAGAAAGGTGGATTCTTGCACGGCGGCGTTTTGAGGGGGCATAAGCTTGCGGTTCTCTGTCTGGCCGCGGCGGGGAACCTTGTCTTCAGTGGCTCTGCGGATAAGAATGTTTGCGTGTGGAAGCGTGACGAAAATGGCTTCCACACGTGCCATTCGGTTCTGACGGGGCACAGTGGTCCTGTTAAGTGTATCGCCGTAGAGGAAGCAGAACCGCCGCCGGAGGGTCGTTGCGAGAAGGGGAACCTGCGGTGGATTGTGTACACCGGGAGCTTGGACAAGTCGGTGAAGGTGTGGTGCGTGTCTGAACACGCGCCGGACGCGAGCGTGTTCCAGAGCTGGGCCACACCGTATCATTCCTCCTCCTCCGCAGTTGGATTCAGTTATTCCTCGCCGGGGAAAATTAGTGTTAATTCATCACCGGCGTGGAGTTATTCGTCGCCGAGAAGAATTGGTGTTAGTTCCGTCTCAGCAGGATTCAGCTATTCCTCACCCACTTCATTCGGGCTCAATTCATCTTCCTCCCCAGCAGGAGGAATGATTTATTCTTCGCCCAGAAAAATCAATGTTAGCAACAACAGTGGAAATAGCAACCGCAATGGTGATAGTACTCAAAGTTTTGATAACGATGATGATGATGATGATGATAGATGTATATTCAATGGCAATGGCACCAACAACAGGAGCAGTAGCACTAAAAGCGGCGACAATGGCATTGGCAGCAACAACCGCGATAGTGTTAAAAGCAGTGGCAATGGAGAAAACAACCGCAACAATGGTGGTTCTAAAAGCGGTGACAATGGCAGCAACAACGTCAATCGTGATAATGCTAAAAGTGGTGGCAATGACAGCAACAACCGCATCAGTGATAGTTCTAAAAGTGGTGGCGATGGCAGCAACAGCCGCGACAGTGATAGTGCTTATGGCAGTGGCAATAACATCCGAAACAAAGATGGTGCTAAAAGCAATGGTAACAGCAGCAACATTGATAGTTCTTATGGTAATAGGAATAGCATACACAATAGTGATAGTGCTAAAAACAATCCCCGTAATGGTGATGATGCTTATGGCAACAAGAACAACAATCATAATGCTAAAAGCAATGGGAATAGCAATGACTATCGCAACAGCAATAGTGTTAAAAGCAGTGGCACTAGCAACGGCATCCGAAACAGTGATTGTGCTAAAAGCAATAGCAATGTCAATGGCCATAACAACAGCAGCTGCAAGAGTGATGGTGCTAAAAGCAATAACAATTACACTCGCAACAGTTAG 2325 0.5054 MTNAHGGAMLVEHKTNSNSVHRQKFGALLHSETTSLYTSNHDDDEFSSHNNQRHSSNNASPYIMSPWNYQPNGNNNSSSSPFNKSPWLLPSSPAINLFHHHHHHHDNDLPENGLIGSLVRKEGHIYSLAVSGNLLYTGSDSKNIRVWKDLKDFTGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPSNHKRIGSLPTFKEYVKSSMNPKNYVEVRRHRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTLKVWRVADSKCLESISAHDDAVNAVAAAFGGCVLTGSADGTVKMWRRENQGKKFKHVLDRVLLKRENAVTALAVNRLATVVYCGSSDGLVNFWERDQKGGFLHGGVLRGHKLAVLCLAAAGNLVFSGSADKNVCVWKRDENGFHTCHSVLTGHSGPVKCIAVEEAEPPPEGRCEKGNLRWIVYTGSLDKSVKVWCVSEHAPDASVFQSWATPYHSSSSAVGFSYSSPGKISVNSSPAWSYSSPRRIGVSSVSAGFSYSSPTSFGLNSSSSPAGGMIYSSPRKINVSNNSGNSNRNGDSTQSFDNDDDDDDDRCIFNGNGTNNRSSSTKSGDNGIGSNNRDSVKSSGNGENNRNNGGSKSGDNGSNNVNRDNAKSGGNDSNNRISDSSKSGGDGSNSRDSDSAYGSGNNIRNKDGAKSNGNSSNIDSSYGNRNSIHNSDSAKNNPRNGDDAYGNKNNNHNAKSNGNSNDYRNSNSVKSSGTSNGIRNSDCAKSNSNVNGHNNSSCKSDGAKSNNNYTRNS* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0399 774 PRINTS G protein beta WD-40 repeat signature 173 187 IPR020472 -
Gso12g0399 774 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Gso12g0399 774 PRINTS G protein beta WD-40 repeat signature 288 302 IPR020472 -
Gso12g0399 774 SUPERFAMILY WD40 repeat-like 115 479 IPR036322 GO:0005515
Gso12g0399 774 MobiDBLite consensus disorder prediction 39 84 - -
Gso12g0399 774 SMART WD40_4 355 392 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 263 301 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 225 260 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 111 148 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 310 349 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 398 450 IPR001680 GO:0005515
Gso12g0399 774 SMART WD40_4 149 186 IPR001680 GO:0005515
Gso12g0399 774 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 228 261 - -
Gso12g0399 774 MobiDBLite consensus disorder prediction 51 84 - -
Gso12g0399 774 MobiDBLite consensus disorder prediction 533 554 - -
Gso12g0399 774 Gene3D - 218 475 IPR015943 GO:0005515
Gso12g0399 774 MobiDBLite consensus disorder prediction 570 774 - -
Gso12g0399 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 362 392 IPR001680 GO:0005515
Gso12g0399 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 228 269 IPR001680 GO:0005515
Gso12g0399 774 Gene3D - 107 217 IPR015943 GO:0005515
Gso12g0399 774 MobiDBLite consensus disorder prediction 533 774 - -
Gso12g0399 774 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 300 IPR001680 GO:0005515
Gso12g0399 774 Pfam WD domain, G-beta repeat 360 392 IPR001680 GO:0005515
Gso12g0399 774 Pfam WD domain, G-beta repeat 231 259 IPR001680 GO:0005515
Gso12g0399 774 Pfam WD domain, G-beta repeat 265 300 IPR001680 GO:0005515
Gso12g0399 774 Pfam WD domain, G-beta repeat 401 449 IPR001680 GO:0005515
Gso12g0399 774 Pfam WD domain, G-beta repeat 122 148 IPR001680 GO:0005515
Gso12g0399 774 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 466 IPR045182 -
Gso12g0399 774 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 10 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0399 Gso-Chr12 3505432 3508453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0399 229 449 Miscellaneous Gene Families AT5G08390 25.446 3.01e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0399 - - gsj:114379287 1420.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0399 12 3505432 3508453 Gso11g1054 11 9396171 9400052 GST