Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1054 ATGACAAACGCACACGGTGGCGCCATGTTAGTAGAGCGAAATACAAACAGCACCGTACGCAGACAAAAATTCGGAGCCTTGTTGCACTCCGAACCGACGTCGCTTTCCACCTCCAACAACGACGATGATGAATTCTCCCATAACCAACAACGGCACAGCAACGCCAGCCCCAGAAACTACGCCGATAGCAGCACCACAAGCAGCAACAATGCCTCTCCCAACACCATGTCTCCGTGGAGCTACCAACCCAACAACAACTCTTCTTCTCCTCTCGATAAATCTCCGTGGATATTGCCTTCTTCACCGGCGATAAACCACTTCCACCACCACCATGACGATACCGAAAACGGCCTCTTCGGATCTATCGTCCGCCAGGAGGGCCACATATATTCCCTCGCCGTTTCCGGGGACTTGCTTTACACCGGCTCCGACAGCAAGAACATAAGAGTGTGGAAGGATCTCAAAGACTTCGCGGGATTCAAATCAAGCAGCGGATTGGTGAAAACGATTGTTATCTCCGGCGGGAAGATCTTCACCGGCCATCAAGACGGGAAGATCAGAGTGTGGAAGGTTTCGTCGAAGAATCCGCGCAACCATAAACGTATCGGGAGCTTGCCGACGTTCAAAGAGTACGTGAAGAGTTCGATGAATCCGAAGAACTACGTGGAGGTTCGGCGGCACCGGAACGCGGTGAAGGTGAAGCACTTCGACGCCGTTTCGAGCCTGAGTTTGGACGAGGAGGAAGGGTTGTTGTACTCGGGGTCGTGGGACAAGACGCTCAAGGTGTGGCGCGTGGAGGATTCAAAGTGCTTGGATTCGATTAACGCGCACGAGGACGCCGTGAACGCGGTGGTGGCGGCGTTCGGAGGGTGCGTGTTGACGGGCTCCGCGGACGGGACGGTGAAGGTATGGAGGAGGAAGAACGACGGGAAGAAGGCCAAGCACGTGCTGGACCGCGTTTTGCTGAAGCAGGAGAACGCGGTTACGGCGCTGGCGGTGAACCGTTTGGCAAAAGTGGTTTATTGCGGTTCTTCTGATGGGTTGGTGAATTTCTGGGAGTGTGACCAGAAAGGCGGGTTCTCACACGGCGGCGTTTTGAGGGGGCATAAGCTCGCTGTTCTCTGTCTCGCTGCGGCGGGGAACCTTGTCTTTAGTGGCTCCGCAGATAAGAATGTTTGCCTGTGGAAGCGTGACGAACATGGGTTCCACACGTGCCATTCGATTCTGACGGGGCACACTGGTCCTGTTAAGTGTATTGCTGTGAGGGAAGAAAAACCGCCCCCGGAGGAGCCTTGCGAGAAGAAGGATCAACGGTGGTTTGTGTACACCGGGAGCTTGGACAAGTCCGTGAAGGTGTGGTGCGTGTCTGAACAAGCGCCGGAGGCGAGCATGTTCCAAAGCTGGGCCACACCGGGTCATGCCGGTTCACCGGGGAAAATTAGTGTTAGTTCATCACCTGCGTGGAGTTATTCATCGCCGAGAAGAATTGGTGTTACTTCCGCAACAGGTGGATTCGGCTATTCCTCACCCGGATCTATCAGGGTCAATTCCTCTTCCTCCCCATTTCGAACAAGTTATTCTTTGCCCAGAATATTCAGTGTTAGCAATGACAGTGGAAACAGCAACGGCAATGGTCATAGTACTAAAAGTTTTGATAATGGCAATAACAGCAGAACCACTGATGATGGTGCTAAAAACAATGATGATAACACTAAAAGTGAGGACAATGGCAACAACAATAACCACAGTGCTAAAAGCAATGACGGTGGCAACAACAATCCCAACAACAATGACAGAGCTAAAAGCATTGGCAATGAAAACAAAGATTGCGACAATGATAATGCTAAAAGCATTGTCAGTGGCAACAACAACCGAAACAGTGATAGCACCAAAAGCAGTTACAATGGTAGCAACAACCCCAACAATGATGGTGCTTATAGCAATGCCAACAACAGCCACGACACTAATAGCACTAAAATCATTGGAAATGGCAACAACAACAACAACAACAACATTGATGATGCTTCTGGCAATGGCAAGAAAAACAACAACATTGATGGTGCTTCTGGCAATGGCAAGAAAAACAACAACATTGATGGTGCTTCTGGCAATGGCAACAACAATCGCAACATTAATAGTGCTAAAAGCATTGGTGGCAACAACAACCGAAACAGTGATAGCACCAAAAGCAGTTACAATGGTAGCAACAACCCCAACAATGATGGTGCTTATAGCAATGCCAACAACAGCCACGACACTAGTAGCACTAAAATCATTGGAAATGGCAACAACAACAACAACAACATTGATGATGCTTCTGGCAATGGCAAGAAAAACAACAACATTGATGGTGCTTCTGGCAATGGCAAGAAAAACAACAACATTGATGGTGCTTCTGGCAATGGCAACAACAATCGCAACATTAATAGTGCTAAAAGCATTGGTGGCAATAACCGCAACAGTGATAGCACTAAAAGCGGCGACAATAGCAGCAACAACCGCAACAGTGATAACACTAAAAGCGGTGACAATGGAAACAACCACCACAACATTGATGTTGCTTATGGCAATGGCAGCACCAACCGCAACAATGATAGTTCTAAAATCGGTGACAATGGAGACAACAACCGCATCAATGATAGTTTTAAAAGCAATAGCAATGCCAATGGCCATAACAACAGCAGCGACAAGAGTGGTGGTGCTAAAAGTAATGGCAATAGCAATAACAACAGCAACGGTGGTGGTGCTAAAAGCAATGACATTGGCAATGGAAATAGCAATTATAACCGCAACAGTGATGGTCCTAAAAGCAATGTCATTGGAAATTACAACCAAAATAGTGGTGGTAAAAGCAGTGGAAATGGCAATGAAAAGAGCAATAGCAACCGTAGCAGTGGTGGTGCTAAAAGCAATGGCAATAGCATCCAAAACAGCAACAGTAATCGTACCAGAAGCAATGCCAATGCCAACAATAATTACACAAACAACCCCTTCCAAAACAATAGCACCGGTGCCGGTGACACTCGAAACAGGAACGAGAGGCAGTTGCAAAGTAGAAATCAATATTGTAATTAA 3075 0.4797 MTNAHGGAMLVERNTNSTVRRQKFGALLHSEPTSLSTSNNDDDEFSHNQQRHSNASPRNYADSSTTSSNNASPNTMSPWSYQPNNNSSSPLDKSPWILPSSPAINHFHHHHDDTENGLFGSIVRQEGHIYSLAVSGDLLYTGSDSKNIRVWKDLKDFAGFKSSSGLVKTIVISGGKIFTGHQDGKIRVWKVSSKNPRNHKRIGSLPTFKEYVKSSMNPKNYVEVRRHRNAVKVKHFDAVSSLSLDEEEGLLYSGSWDKTLKVWRVEDSKCLDSINAHEDAVNAVVAAFGGCVLTGSADGTVKVWRRKNDGKKAKHVLDRVLLKQENAVTALAVNRLAKVVYCGSSDGLVNFWECDQKGGFSHGGVLRGHKLAVLCLAAAGNLVFSGSADKNVCLWKRDEHGFHTCHSILTGHTGPVKCIAVREEKPPPEEPCEKKDQRWFVYTGSLDKSVKVWCVSEQAPEASMFQSWATPGHAGSPGKISVSSSPAWSYSSPRRIGVTSATGGFGYSSPGSIRVNSSSSPFRTSYSLPRIFSVSNDSGNSNGNGHSTKSFDNGNNSRTTDDGAKNNDDNTKSEDNGNNNNHSAKSNDGGNNNPNNNDRAKSIGNENKDCDNDNAKSIVSGNNNRNSDSTKSSYNGSNNPNNDGAYSNANNSHDTNSTKIIGNGNNNNNNNIDDASGNGKKNNNIDGASGNGKKNNNIDGASGNGNNNRNINSAKSIGGNNNRNSDSTKSSYNGSNNPNNDGAYSNANNSHDTSSTKIIGNGNNNNNNIDDASGNGKKNNNIDGASGNGKKNNNIDGASGNGNNNRNINSAKSIGGNNRNSDSTKSGDNSSNNRNSDNTKSGDNGNNHHNIDVAYGNGSTNRNNDSSKIGDNGDNNRINDSFKSNSNANGHNNSSDKSGGAKSNGNSNNNSNGGGAKSNDIGNGNSNYNRNSDGPKSNVIGNYNQNSGGKSSGNGNEKSNSNRSSGGAKSNGNSIQNSNSNRTRSNANANNNYTNNPFQNNSTGAGDTRNRNERQLQSRNQYCN* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1054 1024 Pfam WD domain, G-beta repeat 364 396 IPR001680 GO:0005515
Gso11g1054 1024 Pfam WD domain, G-beta repeat 235 263 IPR001680 GO:0005515
Gso11g1054 1024 Pfam WD domain, G-beta repeat 126 152 IPR001680 GO:0005515
Gso11g1054 1024 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Gso11g1054 1024 Pfam WD domain, G-beta repeat 405 453 IPR001680 GO:0005515
Gso11g1054 1024 PANTHER EN/SPM-LIKE TRANSPOSON PROTEIN-LIKE 9 470 - -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 470 521 - -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 50 95 - -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 536 561 - -
Gso11g1054 1024 Gene3D - 106 223 IPR015943 GO:0005515
Gso11g1054 1024 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 9 470 IPR045182 -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 536 1024 - -
Gso11g1054 1024 SUPERFAMILY WD40 repeat-like 126 465 IPR036322 GO:0005515
Gso11g1054 1024 MobiDBLite consensus disorder prediction 28 43 - -
Gso11g1054 1024 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515
Gso11g1054 1024 MobiDBLite consensus disorder prediction 573 601 - -
Gso11g1054 1024 ProSiteProfiles Trp-Asp (WD) repeats profile. 366 396 IPR001680 GO:0005515
Gso11g1054 1024 Gene3D - 359 543 IPR015943 GO:0005515
Gso11g1054 1024 Gene3D - 224 358 IPR015943 GO:0005515
Gso11g1054 1024 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 304 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 314 353 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 267 305 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 229 264 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 153 190 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 402 454 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 115 152 IPR001680 GO:0005515
Gso11g1054 1024 SMART WD40_4 359 396 IPR001680 GO:0005515
Gso11g1054 1024 MobiDBLite consensus disorder prediction 614 1024 - -
Gso11g1054 1024 CDD WD40 126 453 - -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 477 521 - -
Gso11g1054 1024 MobiDBLite consensus disorder prediction 28 95 - -
Gso11g1054 1024 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1054 Gso-Chr11 9396171 9400052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1054 225 453 Miscellaneous Gene Families AT5G08390 25.431 2.39e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1054 - - gmx:100807706 1830.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0399 12 3505432 3508453 Gso11g1054 11 9396171 9400052 GST