Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0370 ATGGAGGAGAAACGCCGCGACGCCGCTCCCTCCGCCGCCGATTCGCCGGCATCGGAGCCAGCAACGTCTCGCCGCCGCGCCGGAGCCAACAAGAGGAAGTTCGGCACCCTCAGCGCCTCCGGTTCCTCCTCCGCACCCTCCAAACGCGCCGCTCGCGACAAGGCTTCACCGCTCTTCCCTCCTGCCCCCCACAATGGTCCCCTCACCAGGGCCCGCCAAACCCCCAACAACCTCTCCGCCTCCTCTTCCGCCGCCGCTTCCGCTCCCGCCGCCGTCAAACGCTCCGAACGCGCCCACCCTTCCGCTGCTGAGTCCACGGCGCTGGCTGAGCAGCTCAAGAAGGAGAGCGAGTGGGAGACTCTCGAGGCCGCGATTGAAGCCGAATTCGAAGCTATCAGATCTCGCGGTGCCAATGCGCACGTGGTTCCCACCCACTGCGGTTGGTTTTCATGGTCATGTATTCATCCAATTGAGAAGCAAATGTTGCCTTCTTTCTTTAGTGGCAAGACTGAAAATCGGACTTCTGATGTATACATGGAGATAAGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAATGTACAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGACTCGGATGCCAGGCAAGAGGTAATGGAGTTTTTGGACTATTGGGGTTTAATTAACTTCCATCCATTCCCTTCAATGGATTCTTCTGTGGCCACTGCCAGTGATGATGGAGAAGCAGAAAAGAGTTTGTTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCCACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACGACCTCTGGCTTGTTTCCAGAGTCTACAATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTACCGACTGCTTCAGTAATAGAAGATTTGGCTCTGGCATGTCTTCATTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAGGAGACTCTCCTGCTCCTTGAAGCATTAGAACTGTATAAAGAAAACTGGAATGAAATTGCAGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATTGCACTTTGTTCAAATGCCAATTGAGGATACCTTTGTTGACTGTGATGATGATGTTGATGCTGGTTGCAAAGAAACTGCGGATCCAGTTGCAACAAAAAGTGACTCATCTATGGACAAAGATGCTTCAGAATGTATTGAGAATCATACTAGCGATGGCATCAAAGACAGTGAAAAAACTTCCAAAGCTGAAGATCTCGAAGTCAAAGTGAATCAGAAGGAGACTCCAAAGTTACAAGAAGGCAGTGATGAGAAAGCCAGCGAGGAAACTTCTAAATCAGAAGATGCTGTTAAGGTAAAGATTGATCAGGAAGCAGACAATGACTGTGCTATAAATGCTCTTAAGGAAGCATTTGCGGCTGTTGGTTATTCTCCTGGACCTGAAGGCCCTTCTTCATTTGCTGATGTGGGTAATCCTGTCATGGCACTGGCAACTTTTCTTGCACACTTGGTGGGTTCTGATGCGGCTGTTGCTTCAGCTCACAGCTCCATAAAATCCATGACAAGAAATTCTCCTGGCACCGAGCTTGCTGCAAGGTGTTGCTTTCTTCTAGAAGATCCGCCAGATAGCAAGAAGGAACCAACTAGTTCTGAGAGGGATTCTAAAAGTGAGGGAGACCAGGATGAAGTAAATGTAAACCAGGATAAATCAACGTTGGAGGATAAAGATTTACCAACTGATCACAATAATAAGAAAATTGAAAGTAATGCTTTAGAAGACAAGGGAAAGCCTGCTTCTGCAGATGATGGCGCCTCGGAAATACCCATTTCTTCAAAGGAACAAGCGGTGGTTAATAATGAATGTGGGCTTGACAAGTGTCATGATCTCAACAATGCAAAGCTACCCAATGATCAAGCACCTGGCACTCTGCATAATTCAGGTGGTTCAACATCCAAGGCTGAAATTCCATCTAGTTCTGACAAGGCTCAGGAGGAAACTTTAATTGAAGAACCTTGCCCTTCTGTAAAGGACAGGCATGTGTCTGATTCTCTTCCATCAGAGACATCAAAAGATGCTGAGATGGTTTCTGATGCTATTCCCTCAACTAAGAGCAAGCCTCAAAATCCAGAGTCTACAAATCCAGCTCATGAATCTCTAGAAACAACAGACTCAGTAATGGATGTGGATGGAGTTTCTAATTCCTTGCCATTGGAAAAGATTGACTCTCAGCCACTAATTACATCAAAATCATCCCAATGTAATGGGACAGAAAAGGATGTAGAAGTGATGTCACCTTCAAATCCAGTTAGATCAAATTCTAGTGCTGAAAATGGTCCAAATACAGGGGCAGGTAAAGATAATGCAGATAATGGAGCAAAAGTGGAAGATGATGGTACAAAGACTAAACAGGATAGCAGTTTTGAGAAAGTGAAACGTGCTGCTGTTTCTACACTTGCTGCAGCAGCAGTAAAAGCAAAACTTCTAGCAAATCAGGAAGAAGACCAAATTCGACAGCTTACTTCCTTGTTGATAGAAAAGCAGTTGCACAAGTTGGAAACAAAGTTGGCTTTTTTCAATGATGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCACGGCATAAGCTTTATCATGAGCGTGCTTTGATAATTGCATCAAGGCTTGGTATACCACCTTCCTCATCTAGAGGTGTACCACCATCTATACCAACCAATAGAATTCCTACAAATATTGCAAACTCACTCCCAAGACCACAAATGATGATGAATCCACCAAGACCACTGATTTCTAGACCTGCAGGCACGGTAGCAACTATTCAAAACCCATTAACACCTTCAACTGCAGCAGGAAATTCAGTTCGGCCATCTAATCAGGAAAAGCTTTCTTCTGTTGGGACAAAATAA 3051 0.453 MEEKRRDAAPSAADSPASEPATSRRRAGANKRKFGTLSASGSSSAPSKRAARDKASPLFPPAPHNGPLTRARQTPNNLSASSSAAASAPAAVKRSERAHPSAAESTALAEQLKKESEWETLEAAIEAEFEAIRSRGANAHVVPTHCGWFSWSCIHPIEKQMLPSFFSGKTENRTSDVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDSDARQEVMEFLDYWGLINFHPFPSMDSSVATASDDGEAEKSLLLEKLYHFETLQLCPPVQRSSQMTPATTSGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCILHFVQMPIEDTFVDCDDDVDAGCKETADPVATKSDSSMDKDASECIENHTSDGIKDSEKTSKAEDLEVKVNQKETPKLQEGSDEKASEETSKSEDAVKVKIDQEADNDCAINALKEAFAAVGYSPGPEGPSSFADVGNPVMALATFLAHLVGSDAAVASAHSSIKSMTRNSPGTELAARCCFLLEDPPDSKKEPTSSERDSKSEGDQDEVNVNQDKSTLEDKDLPTDHNNKKIESNALEDKGKPASADDGASEIPISSKEQAVVNNECGLDKCHDLNNAKLPNDQAPGTLHNSGGSTSKAEIPSSSDKAQEETLIEEPCPSVKDRHVSDSLPSETSKDAEMVSDAIPSTKSKPQNPESTNPAHESLETTDSVMDVDGVSNSLPLEKIDSQPLITSKSSQCNGTEKDVEVMSPSNPVRSNSSAENGPNTGAGKDNADNGAKVEDDGTKTKQDSSFEKVKRAAVSTLAAAAVKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVERSRHKLYHERALIIASRLGIPPSSSRGVPPSIPTNRIPTNIANSLPRPQMMMNPPRPLISRPAGTVATIQNPLTPSTAAGNSVRPSNQEKLSSVGTK* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0370 1016 MobiDBLite consensus disorder prediction 948 966 - -
Gso12g0370 1016 ProSitePatterns Zinc finger ZZ-type signature. 307 333 IPR000433 GO:0008270
Gso12g0370 1016 MobiDBLite consensus disorder prediction 835 855 - -
Gso12g0370 1016 ProSiteProfiles Zinc finger ZZ-type profile. 302 356 IPR000433 GO:0008270
Gso12g0370 1016 PANTHER SWI/SNF COMPLEX-RELATED 41 981 - -
Gso12g0370 1016 Gene3D - 359 410 - -
Gso12g0370 1016 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 398 IPR017930 -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 69 88 - -
Gso12g0370 1016 SUPERFAMILY Homeodomain-like 359 412 IPR009057 -
Gso12g0370 1016 Pfam SWIRM-associated region 1 863 939 IPR032451 -
Gso12g0370 1016 SUPERFAMILY RING/U-box 297 350 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 782 830 - -
Gso12g0370 1016 ProSiteProfiles SANT domain profile. 363 410 IPR017884 -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 983 1016 - -
Gso12g0370 1016 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 41 981 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 942 1016 - -
Gso12g0370 1016 Gene3D - 146 231 IPR036388 -
Gso12g0370 1016 ProSiteProfiles Myb-like domain profile. 356 406 IPR001005 -
Gso12g0370 1016 Pfam Zinc finger, ZZ type 304 339 IPR000433 GO:0008270
Gso12g0370 1016 MobiDBLite consensus disorder prediction 671 855 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 681 708 - -
Gso12g0370 1016 SUPERFAMILY Homeodomain-like 147 229 IPR009057 -
Gso12g0370 1016 SMART sant 360 408 IPR001005 -
Gso12g0370 1016 CDD ZZ_RSC8 305 349 IPR041984 -
Gso12g0370 1016 Gene3D - 299 348 IPR043145 -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 447 498 - -
Gso12g0370 1016 Pfam Myb-like DNA-binding domain 362 404 IPR001005 -
Gso12g0370 1016 CDD SANT 380 405 IPR001005 -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 582 658 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 584 646 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 35 49 - -
Gso12g0370 1016 Pfam SWIRM domain 143 228 IPR007526 GO:0005515
Gso12g0370 1016 MobiDBLite consensus disorder prediction 746 775 - -
Gso12g0370 1016 MobiDBLite consensus disorder prediction 1 108 - -
Gso12g0370 1016 ProSiteProfiles SWIRM domain profile. 140 237 IPR007526 GO:0005515
Gso12g0370 1016 MobiDBLite consensus disorder prediction 709 732 - -
Gso12g0370 1016 SMART zz_5 301 345 IPR000433 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0370 Gso-Chr12 3244086 3250212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0370 305 402 EF-hand Containing Proteins AT3G07740 37.069 1.40e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0370 K11649 - gmx:100786881 1948.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0370 12 3244086 3250212 Gso11g1015 11 9058807 9065144 GST