Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1015 ATGTTTGGAAGACAGCCCAGCACCACCACAGTTTCACTCACCCAAATATTTTTTTTCCCTAACCCCCCTTTTCTCCTTCTCGTCTCGATGGAGGAGAAACGCCGCGACGCCGCTCCCTCCGCCGCCGATTCGCCGGCATCAGAGCCCGCAACCTCTCGCCGCCGCGCCGGAGCCAACAAGAGGAAGTCCGGCGCCCTCAGCGCCTCCGGTTCCTCCTCCGCGCCCTCCAAACGCGCCTCTCGCGACAAGGCCTCACCGCTCCACCCTCCTCCCCTCCACAATGGCCCCCTCACCAGGGCCCGCCAAACCCCCAACAACCTCGCCTCCGCCTCCTCTTCCGCCGGCGCTTCCGCTCCCGCCGCCGTCAAACGCTCTGAACGCGCCCACCCTTCCGCCGCCGAGTCCGCCGCGCTCGCTGAGCAGCTCAAGAAGGAGAGCGAGTGGGAGACTCTCGAGGCCGCGATTGAAGCCGAATTCGAAGCTATCAGATCTCGCGGTGCCAATGCTCACGTGGTTCCCACTCACAGCGGTTGGTTTTCATGGTCATGTATTCATCCAATTGAGAAGCAAATGTTGCCTTCTTTCTTTAATAGCAAGACTGATAATCGGACTCCTGATGTATACATGGAGATAAGGAATTGGATAATGAAGAAGTTTCATTCAAATCCAAACGTACAAATTGAATTGAAAGATATGTCACAGCTTAATGTTGGAGACTCAGATGCTAGGCAAGAGGTAATGGAGTTTTTGGACTATTGGGGTTTAATTAACTTCCACCCATTCCCTTCAATGGATTCTGCTATGGCCACTGGCAGTGATGATGGAGAAGCTGAAAAGAATTCATTGCTTGAAAAATTGTATCACTTTGAAACTCTCCAATTATGTCCACCTGTTCAAAGGTCTAGCCAAATGACTCCAGCTACTACCTCTGGCTTGTTTCCGGAGTCTACAATTGCTGAAGAGTTGGTGAAACAAGAGGGGCCAGCAGTTGAGATGCTTGAGTACCATTGCAACTCTTGTTCTGCTGATTGTTCTCGCAAACGTTACCATTGCCAGAAGCAGGCAGATTTTGATCTATGTACCGACTGCTTTAGTAATAGAAGATTTGGCTCTGGCATGTCTTCGTTGGATTTTATACTCATGGAACCAGCTGAAGTTGCAGGGGTTAATGGTGGAAAGTGGACTGATCAAGAGACTCTTCTGCTCCTTGAAGCATTAGAACTTTATAAAGAAAATTGGAATGAAATTGCAGAACATGTTGGAACAAAAACAAAAGCTCAGTGCATATTACACTTTGTTCAAATGCCAATTGAGGATACCTTTGTTGACTGTGATGATGATGTTGTTGCTGTTTGCAAAGAAACTGTGGATCCAGTTGCAACAAACAATGACTCATCTATGGACAAGGATGCTTCAGAATGTATTGAGAATGATACTAGTGATGGCATCAAAGACAATGATAAAACTTCCAAGGCTGAAGATCTTGAAGTGAAAGTGAATCAGGAGGAGACTACAAAGTTACAAGAAGGCAGTGATGAGAAATCTACCGAGGGAACTTCTAAATCAGAAGATGCTGTTAAGGTAAAGATTGATCAAGAAGCAGGCAATGACTGTGCTATAAATGCTCTTAAGGAAGCATTTGCAGCTGTTGGTTATTCTCCTGGACCTGAAGGCCCTTCTTCATTTGCTGAAGTGGGTAATCCTGTCATGGCACTGGCAACTTTCCTTGCACACTTGGTGGGTTCTGATGTGGCTGTTGCTTCAGCTCATAGCTCCATAAAATCCATGTCAAGAAATTCACCTGGCACCGAGCTTGCGGCAAGGTGTTGCTTTCTTTTAAAAGATCCCCCAGATAATGAGAAGGAACCGACTAATTCTGAAAGGGATTCTAAAAGTGAGGGAGATCAGGATGAAGTAAATGTAAAACAGGATAAACCAACATTGGAGGATAAAGATTTACCGAATGATCACAGTAATACAAAAATTGAAACTAATGCTTTAGAAGTCAAGGGACAGCCGGCTTCTACAGATGATGGAGCCTTGGAAAAACCCATTTCTTCAAAGGAGCAAGCAGTGAGTAATCATGAAGGTGGGCTTGACAATGGTAATGATCCCAACAATGCAAAGCTACCCAATGATCAAGCACCAGCCACTCTGCATAATTCAGGTGGTTCAACATCCAAGGCTGAAATTCCACTTTGTTCTGACAAGGCTCAGGAGGAAACTTTAATTGAAGAATCTTGCCCTTCTGTAAAAGACAAACATGTGTCTGATTCTCTTCTATCAGACACATCAAAAGATGCTGAAATGGTTTCTAATTCTATTCCCTCAACTAAGAGCAAGCCTCAAAATCCAGAGCCTACAAATCCAGCTTGTGAATCTCTAGAAACAACGGACTCAGTAATGGATGTTGATGGAGTTTCTAATTCCTTGCCATCGGAAAAGATTGACTCTCAGCCACTAATTACGTCAAAATCATCCCAATGTAATGGGACAGAAAAGGATGTAGATATGATGTCACCTTCAAATCCTGTTGTATCAAATTCTGGTGCTGAAAATGGTCCAAATACAGGGGCAGGTAAAGATCATGCAGATAATGGAGCAAAAGTGGAAGATGATGGTACTGAGACTAAACAGGATAGCAGTTTTGAGAAAGTGAAACGTGCTGCAGTTTCTACACTTGCTGCAGCAGCAGCAAAAGCCAAACTTCTAGCAAATCAGGAAGAAGACCAAATTCGACAGCTTACTTCCTTGTTGATAGAAAAGCAGTTGCACAAGTTGGAAACAAAGTTGGCTTTTTTCAATGATGTGGAGAATGTGGTGATGAGGGCAAGGGAGCATGTAGAGCGATCACGGCATAAGCTTTATCATGAGCGTGCTTTGATAATTGCATCACGGCTTGGTATACCACCTTCCTCATCTAGAGGTGTACCACCATCTATAACTACCAATAGAATTCCAACAAATATTGCAAACTCACTCCCAAGACCACAAATGATGATGAATCCACCAAGGCCACTGATTTCTAGACCTGCAGGCACTGTAGCAACTACTCTTCAAAACCCATTAGTATCTTCAACTGCAGCAGGAAATTCAGTTCGGCCATCTAACCAGGAAAAGCTTTCTTCTGTTGGGACAAAATAA 3144 0.4501 MFGRQPSTTTVSLTQIFFFPNPPFLLLVSMEEKRRDAAPSAADSPASEPATSRRRAGANKRKSGALSASGSSSAPSKRASRDKASPLHPPPLHNGPLTRARQTPNNLASASSSAGASAPAAVKRSERAHPSAAESAALAEQLKKESEWETLEAAIEAEFEAIRSRGANAHVVPTHSGWFSWSCIHPIEKQMLPSFFNSKTDNRTPDVYMEIRNWIMKKFHSNPNVQIELKDMSQLNVGDSDARQEVMEFLDYWGLINFHPFPSMDSAMATGSDDGEAEKNSLLEKLYHFETLQLCPPVQRSSQMTPATTSGLFPESTIAEELVKQEGPAVEMLEYHCNSCSADCSRKRYHCQKQADFDLCTDCFSNRRFGSGMSSLDFILMEPAEVAGVNGGKWTDQETLLLLEALELYKENWNEIAEHVGTKTKAQCILHFVQMPIEDTFVDCDDDVVAVCKETVDPVATNNDSSMDKDASECIENDTSDGIKDNDKTSKAEDLEVKVNQEETTKLQEGSDEKSTEGTSKSEDAVKVKIDQEAGNDCAINALKEAFAAVGYSPGPEGPSSFAEVGNPVMALATFLAHLVGSDVAVASAHSSIKSMSRNSPGTELAARCCFLLKDPPDNEKEPTNSERDSKSEGDQDEVNVKQDKPTLEDKDLPNDHSNTKIETNALEVKGQPASTDDGALEKPISSKEQAVSNHEGGLDNGNDPNNAKLPNDQAPATLHNSGGSTSKAEIPLCSDKAQEETLIEESCPSVKDKHVSDSLLSDTSKDAEMVSNSIPSTKSKPQNPEPTNPACESLETTDSVMDVDGVSNSLPSEKIDSQPLITSKSSQCNGTEKDVDMMSPSNPVVSNSGAENGPNTGAGKDHADNGAKVEDDGTETKQDSSFEKVKRAAVSTLAAAAAKAKLLANQEEDQIRQLTSLLIEKQLHKLETKLAFFNDVENVVMRAREHVERSRHKLYHERALIIASRLGIPPSSSRGVPPSITTNRIPTNIANSLPRPQMMMNPPRPLISRPAGTVATTLQNPLVSSTAAGNSVRPSNQEKLSSVGTK* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1015 1047 ProSiteProfiles SANT domain profile. 393 440 IPR017884 -
Gso11g1015 1047 Pfam Myb-like DNA-binding domain 392 434 IPR001005 -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 469 526 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 1021 1047 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 33 138 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 864 885 - -
Gso11g1015 1047 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3D 70 1011 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 98 118 - -
Gso11g1015 1047 ProSiteProfiles SWIRM domain profile. 170 267 IPR007526 GO:0005515
Gso11g1015 1047 MobiDBLite consensus disorder prediction 614 658 - -
Gso11g1015 1047 ProSitePatterns Zinc finger ZZ-type signature. 337 363 IPR000433 GO:0008270
Gso11g1015 1047 PANTHER SWI/SNF COMPLEX-RELATED 70 1011 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 459 526 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 613 885 - -
Gso11g1015 1047 Pfam Zinc finger, ZZ type 334 369 IPR000433 GO:0008270
Gso11g1015 1047 Gene3D - 329 378 IPR043145 -
Gso11g1015 1047 Pfam SWIRM domain 173 258 IPR007526 GO:0005515
Gso11g1015 1047 SMART sant 390 438 IPR001005 -
Gso11g1015 1047 SUPERFAMILY RING/U-box 327 380 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 687 729 - -
Gso11g1015 1047 CDD SANT 410 435 IPR001005 -
Gso11g1015 1047 Gene3D - 176 261 IPR036388 -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 739 762 - -
Gso11g1015 1047 SUPERFAMILY Homeodomain-like 176 259 IPR009057 -
Gso11g1015 1047 Coils Coil 898 918 - -
Gso11g1015 1047 Gene3D - 389 440 - -
Gso11g1015 1047 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 389 428 IPR017930 -
Gso11g1015 1047 SMART zz_5 331 375 IPR000433 GO:0008270
Gso11g1015 1047 ProSiteProfiles Myb-like domain profile. 386 436 IPR001005 -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 763 855 - -
Gso11g1015 1047 MobiDBLite consensus disorder prediction 64 79 - -
Gso11g1015 1047 ProSiteProfiles Zinc finger ZZ-type profile. 332 386 IPR000433 GO:0008270
Gso11g1015 1047 Pfam SWIRM-associated region 1 893 969 IPR032451 -
Gso11g1015 1047 CDD ZZ_RSC8 335 379 IPR041984 -
Gso11g1015 1047 SUPERFAMILY Homeodomain-like 389 441 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1015 Gso-Chr11 9058807 9065144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1015 335 432 EF-hand Containing Proteins AT3G07740 37.069 1.51e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1015 K11649 - gmx:100799723 1965.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0370 12 3244086 3250212 Gso11g1015 11 9058807 9065144 GST