Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0354 ATGGGGAAGGCGAAGGGGAAGCACCGTTTGGACAAGTATTACCACTTAGCGAAAGAGCACGGTTACAGGTCTCGAGCCTCATGGAAGCTGGTCCAGCTCAACTCCAAGTTCGGCTTCCTGGAATCGGCCCGCGCCGTGCTGGACCTCTGCGCCGCCCCCGGAGGGTGGATGCAGGTGGTGGTCCAGCGCGTACCCGTGGACCACCTGGTGATCGGCGTGGACCTCGCCCCCATCGCCCCCGTCCGTGGCGCCATCGCCATCCAGGAAGACATCACCAGGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGACCACGGCTGCCGCGCCTTCGACGTCATCTTGCACGACGGTTCCCCCAACGTCGGTGGCGCCTGGGCCCAGGAAGCTATGAGCCAGAACGCCCTCGTTATTGATGCTGTCAAGTTGGCCACTCAGTTCTTAGCCCCCAAGGGCAAGTTTGTAACCAAAATTTTCAGGTCGCAAGATTACAGTTCTGTGGTGTATTGTTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAGCCTGCGGCTAGTCGTTCTGAATCAGCTGAGATATATGTTTTGGGGCTTGGGTATAAGGCCCCTGCTAAGATTGATCCACGGCTTCTTGATGTGAAGCATCTCTTTCAGGGATCTGTGGAACCACAGCCTAAGGTGGTGGATGTACTTCGAGATACTAAGCAAAAAAGGCACCGTGATGGCTATGAAGATGGAAACACAACTTTGAGGAAGGTGTCTTCAGCTGCAAATTTCATTTGGTCAAATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCCATAACCTTTACTGATCCAGCTGATTCACTGATCAAGGATCATGACCTAACTAGTGAAGAGGTAAAATCTCTCTGCGATGATTTAAGGGTTCTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCAAGTTAGAAAAGCTCTTTCACCAACTCAAAAGCCTGATTCTACCACTACAGAACTGATGGACAATGAGCCTAAGGTGGTGGATGAAGAAGATAGAATACTCAATGAAATGGAGGAACTGACTTATGTAATGGACCGCAAGAAGAAACGTGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAATAGATGATGGTTATGTAGATCAAGAGTTGTTTGCACTTTCCTCTATTAAGGGTAAGAAGGATCTGGTAGCTGTTGACAACACTGAGTATGAAGGTGATGAAGGAGAAGTAGAAGACAGTGAGAATGAAGAAACCCATGAAGGCCGCCCAGAGCATTCATCCAGTGACTTGGAAGATTCTGATGAGGAACGTAAAAGATACAATGAACAAATGGAAGATTTGATGGATCAAGCTTATGAGCGGTTTGTGATCAGAAAGGAAGGAAGTGCAAAACAGAGGAAGCGAATTAAAAAATCCTATGATGCAAAGGCCCAACTTTTGGAGGGTGGTGAGGATGATGATATTGTTCAATCCAAGTATGATTCAGATGAAGATCAGGGTGATCAAGAAGCAAATCCATTGATGGTGCCACTTAATGATGAGGCAGAGCTCACCCAGGAGGAGATCATGAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGCAGAGGAAGGAGACTTTAAGAAGGATGAGAGTAAAGATGAAATGGATATAGATGAGCCTAAGGAGAAGATATCCATTGCCAAAAAGGTAAAAGAAAATAAAACAGCAGCCCCAGCTGTAGCAACTCACCCTCAGCCTCAACCATCCAAGGCAGGGGATGATTTTGAAATAGTTCCTGCACCCGATACTGATTCAAGTGATGATTCATCCTCTGATGAATGGGAAGAAGATATTGAAGCCAAAGCTGAGATATTGGCTTATGCTAAGAAGATGATGAGGAAAAAGCAACGGGAGCACTTACTGGATGATGCATACAACAAGTACATGTTTGATGACGAAGGATTGCCCAAGTGGTTTCTAGATGAGGAGAGGAGACATCGCCAACCAATAAAGCCTATTACCAAAGAGGAAATTGCTGCGATGAAAGCACAGTTTAAAGAAATTGATGCTCGACCTGCGAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAACTTGAGAAGGTACGGAAGAAGGCCAATGCCATATCAGATCAGACAGAGATATCTGATCGTTCGAAGAGGAAGCAAATTGAACAACTATATAAAAGGGCTGTTCCTAAGAGGCCTAAAAAGGAATATGTAGTGGCAAAGAAAGGTGTCCAGGTAAGGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACATGGATCGGGTAAGGGTGGAAAAGGAGGTTCTAAGACGAAGGGCAAGGCTCCAAAGGGCAAAGGAGGATCTTCAAAGGCCTCTGCCTCTGCAAAAAAAGGGAAACAGAGAACTAAATGA 2505 0.4675 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNSKFGFLESARAVLDLCAAPGGWMQVVVQRVPVDHLVIGVDLAPIAPVRGAIAIQEDITRPECKSRIKKLMNDHGCRAFDVILHDGSPNVGGAWAQEAMSQNALVIDAVKLATQFLAPKGKFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLGYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDTKQKRHRDGYEDGNTTLRKVSSAANFIWSNSPLEILGSVTSITFTDPADSLIKDHDLTSEEVKSLCDDLRVLGKQDFKHLLKWRIQVRKALSPTQKPDSTTTELMDNEPKVVDEEDRILNEMEELTYVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAIDDGYVDQELFALSSIKGKKDLVAVDNTEYEGDEGEVEDSENEETHEGRPEHSSSDLEDSDEERKRYNEQMEDLMDQAYERFVIRKEGSAKQRKRIKKSYDAKAQLLEGGEDDDIVQSKYDSDEDQGDQEANPLMVPLNDEAELTQEEIMNKWFSQDVFAEAAEEGDFKKDESKDEMDIDEPKEKISIAKKVKENKTAAPAVATHPQPQPSKAGDDFEIVPAPDTDSSDDSSSDEWEEDIEAKAEILAYAKKMMRKKQREHLLDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPITKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANAISDQTEISDRSKRKQIEQLYKRAVPKRPKKEYVVAKKGVQVRAGKGKVLVDRRMKKDARKHGSGKGGKGGSKTKGKAPKGKGGSSKASASAKKGKQRTK* 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0354 834 Pfam Domain of unknown function (DUF3381) 235 384 IPR024576 -
Gso12g0354 834 MobiDBLite consensus disorder prediction 492 519 - -
Gso12g0354 834 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Gso12g0354 834 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Gso12g0354 834 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 803 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 422 465 - -
Gso12g0354 834 CDD AdoMet_MTases 46 161 - -
Gso12g0354 834 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Gso12g0354 834 Coils Coil 450 470 - -
Gso12g0354 834 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 803 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 793 810 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 557 630 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 481 527 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 435 465 - -
Gso12g0354 834 MobiDBLite consensus disorder prediction 557 585 - -
Gso12g0354 834 Pfam FtsJ-like methyltransferase 22 201 IPR002877 GO:0008168|GO:0032259
Gso12g0354 834 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 803 IPR028589 GO:0008649|GO:0031167
Gso12g0354 834 MobiDBLite consensus disorder prediction 772 834 - -
Gso12g0354 834 Pfam Spb1 C-terminal domain 606 796 IPR012920 GO:0005634|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0354 Gso-Chr12 3116442 3121365 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0354 K14857 - gmx:100784758 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0354 12 3116442 3121365 Gso11g0999 11 8916280 8921405 GST