Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0999 ATGGGGAAGGCGAAGGGGAAGCACCGTTTGGACAAGTACTACCACCTAGCGAAAGAGCACGGTTACAGGTCTCGAGCCTCATGGAAGCTGGTCCAGCTCAACAACAAGTTCCACTTCCTGGAATCGGCGCGCGCCGTTCTCGACCTCTGCGCCGCCCCCGGAGGGTGGATGCAGGTGGCGGTCAAGAGCATGCCCGTGAACCACCTTGTGATCGGCGTGGACCTCTCCCCCATCGCCCCCGTCCGCGGCGCCATCGCCATCCAGGAAGACATCACCAGGCCCGAGTGCAAGTCCCGCATCAAGAAGCTCATGAACGACCACGGCTGCCGCGCTTTCGACGTCATCCTTCACGACGGTTCCCCCAACGTCGGCGGCGCCTGGGCCCAGGAAGCCACCAGCCAGAACGCTCTCGTTATTGATGCTGTCAAGTTGGCCACTCAGTTCTTAGCCCCCAAGGGCATCTTTGTAACCAAAATTTTCAGGTCGCAAGATTACAGTTCTGTGGTGTATTGCTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAGCCTGCGGCTAGTCGTTCTGAATCAGCTGAGATATATGTTTTGGGGCTTAAATATAAGGCCCCTGCCAAAATTGATCCGCGGCTTCTTGATGTGAAGCATCTCTTTCAGGGATCTGTGGAACCGCAGCCTAAGGTGGTGGATGTACTTAGAGATAGTAAGCAAAAAAGGCACCGTGATGGCTATGAAGATGGAGACACAACTTTGAGGAAGCTGTCTTCAGCTGCAAATTTCATTTGGTCAAATTCTCCTCTGGAGATCCTTGGTTCAGTCACTTCCATAACCTTTACTGATCCAGCTGATTCACCAATCAAGGATCATGACCTAACTACTGAAGAGGTAAAATCTCTCTGCGATGATTTAAGGGTTCTGGGGAAGCAAGACTTCAAGCATCTTCTAAAGTGGAGGATTCAAATTAGAAAAGCTCTTTCACCAACTCAAAAGCCTGATTCTACCACCACAGAACAGATGGGAAATGAGCCTAAGGTGGATGAAGAAGATAGAATACTCAATGAAATGGAGGAATTGACTTATGTAATGGACCGCAAGAAGAAACGTGCAAAGAAGCTTCTTGCAAAAAGAAGAGCCAAGGACAAGGCACGAAAAGCAACAGGGATGCAAATGGATGCAATAGATGATGGTTATGTAGATCAGGAGTTGTTTGCTCTTTCCTCTATCAAGGGTAAGAAGGATCTGGTAGCTGTTGACAACACTGAGTATGAAGGTGATGAAGGAGAACTAGAAGACAGTGAGAATGAAGAAACCCATGAAAGCCCAGAGCATTCATCCGGTGACTTAGAAGATTCTGATGAGGAACGTAAAAGATACAACGAACAAATGGAAGATTTAATGGATAAAGCTTATGAGCGGTTTGTGATCAGAAAGGAAGGAAGTGCAAAACAGAGGAAGCGAATTAAAAAATCTTATGATGCAAAGGACCAACTTTTGGAGGGTGGTGAGGATGATGATATTGTTCAATCCAAGTATGATTCAGATGAAGATCAGGGTGATCAAGAAGCAAATCCATTAATGGTGCCACTTAATGATGGGGCAGAGCTCACCCAAGAGGAGGTCATGAATAAGTGGTTTAGTCAGGATGTCTTTGCTGAAGCTGCAGAGGAAGGAGACTTTGAGAAGGATGAGAGTAAAGATGAAATGGATATAGATGAGCCTAAGGAGAAGATATCCATTGCCAAAAAGGTCAAAGAAAATAAAACAGCAGCTCCAGCAGTGGTAGCTCACCCTCAGCCTCAACCATCCAAAGCAGCGGATGACTTTGAAATAGTTCCTGCACCTGATACTGATTCAAGTGATGATTCATCCTCTGATGAATGGGAAGAAGATACTGAAGCAAAAGCTGAGATATTGGCTTATGCTAAGAAGATGATGAGGAAAAAGCAACGGGAGCAGATGCTGGATGATGCATACAACAAGTACATGTTTGATGATGAAGGACTGCCCAAGTGGTTTCTAGATGAGGAGAGGAGACATCGCCAACCAATAAAGCCTATTACCAAAGAGGAAATTGCTGCAATGAAAGCACAGTTTAAAGAAATTGATGCTCGACCTGCGAAGAAGGTGGCAGAGGCCAAAGCACGGAAGAAGCGTGTTGCAATGAGGAAGCTTGAGAAGGTACGGAAGAAGGCCAATGCCATATCAGATCAGACAGAGATATCTGATAGTTCGAAGAGGAAGCAAATTGAACAACTATATAAAAGGGCTGTTCCCAAGAGGCCTAAAAAGGAGTATGTAGTTGCAAAGAAAGGTGTCCAGGTAAGGGCTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCTAGGAAACATGGAATGGGTAAGGCTGGAAAAGGAGGTTCTAAGACGAAGGGCAAGGCTCCAAAGGGCAAAGGATCTTCAAAGGCCTCTGCTAAGAAAGGGAAACAGAGAACTAAATGA 2490 0.4643 MGKAKGKHRLDKYYHLAKEHGYRSRASWKLVQLNNKFHFLESARAVLDLCAAPGGWMQVAVKSMPVNHLVIGVDLSPIAPVRGAIAIQEDITRPECKSRIKKLMNDHGCRAFDVILHDGSPNVGGAWAQEATSQNALVIDAVKLATQFLAPKGIFVTKIFRSQDYSSVVYCLKQLFEKVEVDKPAASRSESAEIYVLGLKYKAPAKIDPRLLDVKHLFQGSVEPQPKVVDVLRDSKQKRHRDGYEDGDTTLRKLSSAANFIWSNSPLEILGSVTSITFTDPADSPIKDHDLTTEEVKSLCDDLRVLGKQDFKHLLKWRIQIRKALSPTQKPDSTTTEQMGNEPKVDEEDRILNEMEELTYVMDRKKKRAKKLLAKRRAKDKARKATGMQMDAIDDGYVDQELFALSSIKGKKDLVAVDNTEYEGDEGELEDSENEETHESPEHSSGDLEDSDEERKRYNEQMEDLMDKAYERFVIRKEGSAKQRKRIKKSYDAKDQLLEGGEDDDIVQSKYDSDEDQGDQEANPLMVPLNDGAELTQEEVMNKWFSQDVFAEAAEEGDFEKDESKDEMDIDEPKEKISIAKKVKENKTAAPAVVAHPQPQPSKAADDFEIVPAPDTDSSDDSSSDEWEEDTEAKAEILAYAKKMMRKKQREQMLDDAYNKYMFDDEGLPKWFLDEERRHRQPIKPITKEEIAAMKAQFKEIDARPAKKVAEAKARKKRVAMRKLEKVRKKANAISDQTEISDSSKRKQIEQLYKRAVPKRPKKEYVVAKKGVQVRAGKGKVLVDRRMKKDARKHGMGKAGKGGSKTKGKAPKGKGSSKASAKKGKQRTK* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0999 829 Hamap Ribosomal RNA large subunit methyltransferase E [rlmE]. 6 202 IPR015507 GO:0001510|GO:0008168
Gso11g0999 829 Hamap AdoMet-dependent rRNA methyltransferase <gene_name> [SPB1]. 1 801 IPR028589 GO:0008649|GO:0031167
Gso11g0999 829 MobiDBLite consensus disorder prediction 422 463 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 710 725 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 791 829 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 705 748 - -
Gso11g0999 829 Pfam Spb1 C-terminal domain 603 795 IPR012920 GO:0005634|GO:0006364|GO:0008168
Gso11g0999 829 PANTHER RIBOSOMAL RNA METHYLTRANSFERASE 1 802 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 326 345 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 326 340 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 776 829 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 567 583 - -
Gso11g0999 829 CDD AdoMet_MTases 46 161 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 436 463 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 726 748 - -
Gso11g0999 829 MobiDBLite consensus disorder prediction 479 526 - -
Gso11g0999 829 PANTHER RRNA METHYLTRANSFERASE-RELATED 1 802 - -
Gso11g0999 829 Gene3D Vaccinia Virus protein VP39 19 208 IPR029063 -
Gso11g0999 829 MobiDBLite consensus disorder prediction 554 632 - -
Gso11g0999 829 Pfam FtsJ-like methyltransferase 22 200 IPR002877 GO:0008168|GO:0032259
Gso11g0999 829 MobiDBLite consensus disorder prediction 479 517 - -
Gso11g0999 829 Coils Coil 448 468 - -
Gso11g0999 829 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 21 202 IPR029063 -
Gso11g0999 829 Pfam Domain of unknown function (DUF3381) 235 383 IPR024576 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0999 Gso-Chr11 8916280 8921405 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0999 K14857 - gmx:100790741 1506.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0354 12 3116442 3121365 Gso11g0999 11 8916280 8921405 GST