Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0335 ATGGTTGTCCTTGCTGCTTCCATTGTGAGTAAATCTGGCAAAGTTCTAGTTTCTAGACAGTTTGTGGACATGTCTCGTATCAGAATTGAGGGACTTCTAGCAGCATTTCCCAAGTTAATAGGCACTGGAAAGCAACACACATATGTTGAGACGGAGAATGTGCGCTATGTTTACCAGCCAATGGAAGCTCTATACCTGCTTCTTGTAACAAACAAACATAGCAACATACTGGAAGACTTGGCAACTCTGAGACTTCTCTCCAAACTTGTTCCCGAATATTCTTACTCCCTTGATGAAGAGGATATTTGCCAAAATGCATTTGAGTTGATTTTTGCATTTGATGAAGTCATCTCTCTTGGGCACACGGAAAATGTGACTGTTGCACAAGTTAAGCAATACTGTGAGATGGAAAGTCATGAAGAGAAACTGCACAAGCTGGTTATGCAGAGCAAAATCAATGATACTAAGGATGTTATGAAGCGGAAAGCTAGTGAGATTGATAAAAGCAAGATTGAAAAGAACAGAGGTGATAAAGGGGGATTTGGTCCTTTACAGTCACTAGGCTCTGGAAAAATTGAAAATAGCTTTAGTGATTTGAGCATATCTAGCAGCGGAACTGGTTTTGCAAGTGGCTCTGGTTTTGGATTGAATTCTGATGTTGATTCCTTTTCTACCAAGTCTAAAGGTCGTCCAACTTCATCTGCCACTGCTCCACCAAAAGGTATTGGAATGAAGCTTGGTAAATCTCAAAGGACAAATCAGTTTTTGGAATCATTGAAAGCAGAAGGTGAGGTCATTCTTGAACATGTTCAGCCAAAACTTGGCCTGCCTCAGGCAGCTGCCCTACCATCAACAGATCCCATTTCTTTAACTGTTGAAGAGAAACTAAATGTGACACTAAAACGAGATGGTGGAGTCAGTAATTTTGATGTTCAAGGCACATTGTCTCTCCAAATTCTTGACAAAGAGGATGGACATATTCAAGTTCAGGTCCAGACAGGGGAGAATCAAGCCATCATTTTCAAGACACACCCTAACATGAATAAAGATTTATTTGCCAATGAAAATATACTAGGCCTAAAGGATCCCAATAGGCCTTTCCCCACGGGTCAAGCTGGTGGTTCTGAAGGTGTTGGTCTTTTAAAGTGGCGAATGCAAAGCACTGACGAGTCAATGGTGCCTCTGACAATCAACTGCTGGCCCTCTTCTTCTGGAAATGAAACTTACGTCAGCATTGAGTATGAGGCTTTGTCATTGTTTGATTTGCAGAATGTTGTGATCTCCGTACCTCTTCCAGCTCTTCGAGATGCACCATCTGTTAAGCAGATTGATGGGGAATGGAGGTATGACTCAAGGAATTCCTTTTTGGAGTGGTCTGTCCTTCTGATTGATAATTCAAACCGCAGTGGGTCAATGGAATTTGTTGTTCCACAAGCCGAACCATCAGCATTCTTCCCCATTTCAGTTCGTTTTATAGCAACTGAAACATTTAGTGACCTGAAGGTCACCAATGTCATACCGCTAAATGGTGGTAATCCTCCCAAGTATTCTCAGAGAACACAGTTGATCACAGAAAACTACCAAATTGTGTGA 1593 0.4162 MVVLAASIVSKSGKVLVSRQFVDMSRIRIEGLLAAFPKLIGTGKQHTYVETENVRYVYQPMEALYLLLVTNKHSNILEDLATLRLLSKLVPEYSYSLDEEDICQNAFELIFAFDEVISLGHTENVTVAQVKQYCEMESHEEKLHKLVMQSKINDTKDVMKRKASEIDKSKIEKNRGDKGGFGPLQSLGSGKIENSFSDLSISSSGTGFASGSGFGLNSDVDSFSTKSKGRPTSSATAPPKGIGMKLGKSQRTNQFLESLKAEGEVILEHVQPKLGLPQAAALPSTDPISLTVEEKLNVTLKRDGGVSNFDVQGTLSLQILDKEDGHIQVQVQTGENQAIIFKTHPNMNKDLFANENILGLKDPNRPFPTGQAGGSEGVGLLKWRMQSTDESMVPLTINCWPSSSGNETYVSIEYEALSLFDLQNVVISVPLPALRDAPSVKQIDGEWRYDSRNSFLEWSVLLIDNSNRSGSMEFVVPQAEPSAFFPISVRFIATETFSDLKVTNVIPLNGGNPPKYSQRTQLITENYQIV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0335 530 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 285 529 IPR036168 -
Gso12g0335 530 ProSiteProfiles Mu homology domain (MHD) profile. 285 530 IPR028565 -
Gso12g0335 530 Gene3D Mu homology domain, subdomain B 288 509 - -
Gso12g0335 530 Gene3D - 3 141 - -
Gso12g0335 530 PANTHER S-ACYLTRANSFERASE 1 529 - -
Gso12g0335 530 Pfam Clathrin adaptor complex small chain 8 132 IPR022775 -
Gso12g0335 530 MobiDBLite consensus disorder prediction 163 186 - -
Gso12g0335 530 MobiDBLite consensus disorder prediction 222 248 - -
Gso12g0335 530 Gene3D Mu homology domain, subdomain B 393 492 - -
Gso12g0335 530 CDD AP_delta-COPI_MHD 286 527 - -
Gso12g0335 530 CDD Delta_COP_N 4 133 - -
Gso12g0335 530 MobiDBLite consensus disorder prediction 163 177 - -
Gso12g0335 530 SUPERFAMILY SNARE-like 5 142 IPR011012 -
Gso12g0335 530 PANTHER COATOMER SUBUNIT DELTA 1 529 IPR027059 GO:0006890|GO:0030126
Gso12g0335 530 Pfam Adaptor complexes medium subunit family 284 508 IPR028565 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0335 Gso-Chr12 2963096 2970368 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0335 K20471 - gmx:100780122 1031.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0335 12 2963096 2970368 Gso11g0984 11 8775687 8782946 GST