Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0332 ATGCTCGTGTTGTTTGAAACCCCTGCGGGTTTTGCCCTGTTTAAAGTGCTGGATGAAGGCAAGCTTTCTAAAGTTGAGGACTTGTGGAAGAACTTTTCCAGCGCAGATACTGCTAGACAGGTGGTCAAGTTGAAAGCATTTTCTAAATTTGAGAACACTTCAGAAGCTCTAGAGGCAGCTACTTTACTTATTGATGGAAAAGCTAGCAAGGGTCTGCGCAAGTTCCTGCGTGTTCATTGTGAAAATGAAACACTAGGTGTGGCAGATTCAAAGCTTGGGAATGTGATCAAGGAGAAATTGAAAATTGACTGTATTCACAACAATGCAGTTATGGAGTTGATGAGAGGCGTTAGAAATCAGTTAACTGAACTTATATCTGGTCTAGCTGTTCAAGACATGGCCCCAATGAGCTTGGGTTTATCTCACAGCTTATCCAGATACAAATTGAAGTTTAGTGCAGAGAAGGTGGATACCATGATTGTCCAGGCTATTGGTTTACTAGATGATCTTGATAAAGAGTTGAATACCTATGCCATGAGGGTTCGAGAATGGTATGGTTGGCATTTTCCCGAGCTTACTAAAATAATACAGGACAACATCCTATATGCCAGGGCAGTCAAGTTGATGGGTGATCGTGTTAATGCAGCTAACCTGGATTTCTCTGAGATTTTGCCAGAGGAAGTTGAGGCAGAGCTGAAGGAGGCATCTGTAATATCTATGGGAACTGAAATTGGTGAGCTTGATTTGGCAAATATTAGAGAACTCTGTGACCAGGTTTTGTCTCTCTCGGAATACAGGGCACAACTCTATGATTATTTGAAGAGTAGAATGAACACCATTGCACCCAATTTGACTGCAATGGTTGGGGAGCTTGTTGGTGCTCGCCTCATTGCCCATGGTGGTAGCTTATTAAATCTTGCAAAGCAGCCTGGCAGTACTGTGCAAATTCTTGGTGCTGAGAAGGCTCTCTTTAGGGCACTAAAGACTAAGCATGCTACTCCCAAGTATGGTCTTATATACCATGCTTCCTTGATTGGTCAGGCAGCTCCAAAGTTCAAGGGGAAAATTTCCCGGTCACTTGCAGCAAAGACGGCATTGGCTATTAGGTGTGATGCTCTTGGAGATAGCCAAGATAACACCATGGGATTGGAGAACAGAGCCAAGCTTGAAGCACGATTGAGGAACCTTGAAGGCAAAGAGTTAGGTCGTTTTGCTGGTTCTGCCAAGGGAAAGCCCAAGATAGAAGCATACGACAAGGACCGAAAGAAAGGAGCTGGAGGACTGATAACCCCGGCCAAGACATATAATCCTTCAGCTGATTCAGTTATTGGGCAAATGGTCAATTCTGCTATGGATGAAGATGCACAAGAGCCTTCTGTTGCTGATAAAAAGAAAGAAAAGAAAGAAAAGAAGGAAAAGAAGAAAAATGAAGGGGATGAAACTGTGCAAGCTGATGGTGACGTTGGTGAGGAACCAGAACCAGAAGTTGTGAAAAAGGAAAAGAAGAAGAAAAGGAAGGAAACTGAGAGTGCTGAGTTGCAGAATGGGAATGACGATAATGCAGGAGAAAAGAAGAAAAAGAGAAAGAAGCATGCCGAGAAGGAAGAATCTCCTGAAATGCCAAGCAAGAAGAAAGGCAAAAAAAAGAAAAGTGGGGACTAA 1662 0.4308 MLVLFETPAGFALFKVLDEGKLSKVEDLWKNFSSADTARQVVKLKAFSKFENTSEALEAATLLIDGKASKGLRKFLRVHCENETLGVADSKLGNVIKEKLKIDCIHNNAVMELMRGVRNQLTELISGLAVQDMAPMSLGLSHSLSRYKLKFSAEKVDTMIVQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIIQDNILYARAVKLMGDRVNAANLDFSEILPEEVEAELKEASVISMGTEIGELDLANIRELCDQVLSLSEYRAQLYDYLKSRMNTIAPNLTAMVGELVGARLIAHGGSLLNLAKQPGSTVQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKFKGKISRSLAAKTALAIRCDALGDSQDNTMGLENRAKLEARLRNLEGKELGRFAGSAKGKPKIEAYDKDRKKGAGGLITPAKTYNPSADSVIGQMVNSAMDEDAQEPSVADKKKEKKEKKEKKKNEGDETVQADGDVGEEPEPEVVKKEKKKKRKETESAELQNGNDDNAGEKKKKRKKHAEKEESPEMPSKKKGKKKKSGD* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0332 553 PANTHER PROTEIN NOP56, PUTATIVE-RELATED 1 551 - -
Gso12g0332 553 Pfam snoRNA binding domain, fibrillarin 166 394 IPR002687 -
Gso12g0332 553 MobiDBLite consensus disorder prediction 407 439 - -
Gso12g0332 553 Gene3D Nop domain 285 397 IPR042239 -
Gso12g0332 553 ProSiteProfiles Nop domain profile. 280 398 IPR002687 -
Gso12g0332 553 SUPERFAMILY Nop domain 153 397 IPR036070 -
Gso12g0332 553 MobiDBLite consensus disorder prediction 491 543 - -
Gso12g0332 553 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 551 IPR045056 GO:0030515|GO:0031428|GO:0032040
Gso12g0332 553 SMART NOSIC_2 159 211 IPR012976 -
Gso12g0332 553 MobiDBLite consensus disorder prediction 456 482 - -
Gso12g0332 553 Coils Coil 460 480 - -
Gso12g0332 553 Pfam NOP5NT (NUC127) domain 2 66 IPR012974 -
Gso12g0332 553 MobiDBLite consensus disorder prediction 451 553 - -
Gso12g0332 553 MobiDBLite consensus disorder prediction 412 426 - -
Gso12g0332 553 Gene3D - 129 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0332 Gso-Chr12 2943885 2948800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0332 K14565 - gmx:100775301 961.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0332 12 2943885 2948800 Gso11g0981 11 8758943 8763244 GST