Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0275 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACCACTCGTTCCAGCAAGCGTGCACGCCTCTCTTCTTCTTCCTCCGCTTCCGCCGCCGCTGCCGCCGCATCCGTTTCTTCCGTGAACACTCGCTCCCGTTCATCCCGGACTAAGGAACCCTTGCCCCCTAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCCTCTGGCTCCCGCCGCGATCGCCGCAACAAAGACAACTCCGACAAGGGGAAGGAGAAAGAGCATGATGTTAGGATTAGGGACAGGGATGCTGACAGAGGGCTGGCATTGAACATGGATGGTGGCGGAGACGATGATGACAATGACAGCGAAGGCGGTGTGGGGATTTTGCATCAAAACTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCATCATCGGCTATGGGTTCTGCGTCTTCCTCTCACCAGAGTGGGAGGCTGAAAAAGATCCTCTTCGGATTGCGGGCGGATGGCGAAGAAGGGCGGCAGGTTGAAGCATTGACACAGCTCTGTGAGATGCTTTCGATTGGGACTGAAGAGTCACTTAGTACATTCTCTGTTGATTCGTTTGTTCCCGTGCTTGTGGGGTTGTTGAATCACGAGAGCAACCCTGACATCATGCTTCTTGCTGCCAGAGCATTGACCCATCTCTGTGATGTGCTCCCTTCATCTTGTGCTGCTGTTGTGCATTATGGTGCCGTGTCAATCTTTTGTGCGAGGTTGCTCACCATAGAATACATGGACCTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCCTATTTGGATTTCTTTTCAACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCGTCATCTCCAGACAAATTAGATGAATTGTGCAACCATGGACTTGTAACACAAGCTGCCTCCCTCATTTCTAACAGCAGTTCTGGGGGTGGTCAGGCTTCTCTCAGCACGCCGACATATACTGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCTCCTCTTGGAGCTAAAACCTTACTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAAGGCCTCTGTTTCTCCTGCATTAAGTAGGCCGCCAGAACAGATATTTGAGATTGTAAACCTCACGAATGAGCTTCTGCCTCCATTGCCACATGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTGTAAAGAAGTCTCCTGCTGGTAGCTCTGGAAAACAAGAAGACACAAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAACTATTAAATGATCAGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTTCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGCCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCTGGCGTCTTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAACTGGAAATTCGACCAATATCTCTACACAGGCATCTTCTGCCGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGCAGTGGGAATTCCAATCCTGATGGAAATCCTTTGGACGATTTGAAAACTCCAGTTTCAGTAAATGTTGGTTCACCTCCTAATTCTGTGGATATGCCAACAGTAAATTCCAGTATTCGGTTATCTGTTAGTACAGCTGCCAAAGCTTTTAAAGATAAGTATTTTCCTTCAGATCCTGGGGCTGCTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCTGATGAACAAAGGACTAATGGAAAGGGGAAATCTAAAACTTCTGGATTTGGTCTGGAAGAGTATTTAATTGGGATCATAGCTGACATGCTAAAGGAACTTGGCAAAGGAGATGGGGTATCTACTTTTGAATTCATTGGTAGTGGTGTTGTTGCAGCTCTGTTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGACCATTAGAAACCCACCTTCCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCACTACCTTCTACTACTGAAGATGGGACTGTGGCTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCAGCCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAGGTCACTTAGGGATTATTCATCCAATGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCAATTGAGGAATTTGTTTGGCCTCGTATCCAACGAAGTGAATTGGGTCAGAAGTCCACTGTACCTGCTGGGAATTCTGAATCTGGGACAACTCCTACAGGAGCTGGTGTATCCTCTCCAACTACCCATCGCCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACATCTAGAAAGGAAATAAGTCAAGATAAAAGCACAAGCTCTTCCAAGGGTAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAGACCAGAAATGCTACTCGCAGAAGAGAAGCTCTTGATAAAGATGCTCAAATAAAGCCTGTAAACGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCCCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGATGATGTACTGAGGGATGATTCTCTTCCTGTTTGTTCACCTGACAAAGTACATGATGTGAAATTGGGCGACATAGTGGAGGAGAGTAATGTTGCTCCTGCAACTAGTGATGGCGGCCAGACTAATGCTGCCTCAGGTTCTAGTAGCAAAGCTGGTACAGTCAGGGGATCAGACTCTGCTGATTTTAGGAGTGGCTATACCTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTGCTTGGTAGTTCTAATGATCCTCCAAAGTTGATATTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATTTATCAGGCAATTCAAAGGCAGCTTGTGCTAGATGAAGATGATGAGGAGAGATTTGCTGGCAGTAGTGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAGGGCAGAGAACCAGACAGATAGGACTCCCCCTGGAGGTTCAACCTCTAATGCTTCAAAATCTGGCAAATCTGGGTCTGTATTGAATTCTAGTTCTGAAGACAAGCTACATCAGACATCTGTATTAGATAGTATTTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTGCTTGAGGGTTTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGGTTACTGATAGCTTTGCAGAGGGAAAATTTTTGGATTTAGTTGAGCTAAGTTTTACCAGTGGTGCTAGGGTTCCTACAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGTAGTGGGAGTCTTCCCTCATGGTGTTACCAGTTATCTAAAGCGTGTCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTATTTTTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAGGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACCGGTCTGGGTCCCACTCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAGTTGTACTTCAAATGTGGAGATCAGGTTCTTCAGAGAAATATCAAATGGAAATTGATGGAGATGAAAAGAAAATGAAAAATAGTGAAGGCTCTTTTGTTGGAGATGGAGAACTCGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAAATTTTCAAAGTGATTGAATATTTCCGATTATTAGGCCGTGTAATGGCTAAAGCTCTTCAAGATGGACGCTTATTGGATTTACCATTGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAACTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAATGTTTTATAGAATCTATTGGTGGTAGCTACAATGATACCTTTGCTAATTTGCATTTTCGTGGGGCCCCAATAGAAGATCTCTGCTTGGACTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACGGTTAAGACTGGAATCATGCGTCAAATGGAAGCTTTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGGAGAGAATTGTGGAAGACTGAGACACTAGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTCGAAATTATGGGAGAATTCACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAACGGGAATGGGCCTTCAGAATTAGCAGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTGAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCATGA 5634 0.4455 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAAAAASVSSVNTRSRSSRTKEPLPPKNPPPMDSANESSGSRRDRRNKDNSDKGKEKEHDVRIRDRDADRGLALNMDGGGDDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSKASVSPALSRPPEQIFEIVNLTNELLPPLPHGTISLPIISNMFLKGPIVKKSPAGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLLPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILTGNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPNSVDMPTVNSSIRLSVSTAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGADEQRTNGKGKSKTSGFGLEEYLIGIIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPLETHLPKLRQQALTRFKLFIAVALPSTTEDGTVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGERSLRDYSSNVVLVDPLASLAAIEEFVWPRIQRSELGQKSTVPAGNSESGTTPTGAGVSSPTTHRHSTRSRSSVNIGDTSRKEISQDKSTSSSKGKGKAVLKPAQEEARGPQTRNATRRREALDKDAQIKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHDDVLRDDSLPVCSPDKVHDVKLGDIVEESNVAPATSDGGQTNAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLLGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDEDDEERFAGSSDYVSSDGSRLWGDIYTITYQRAENQTDRTPPGGSTSNASKSGKSGSVLNSSSEDKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKFLDLVELSFTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKVVLQMWRSGSSEKYQMEIDGDEKKMKNSEGSFVGDGELVQAPLGLFPRPWPANADASEGTQIFKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKCFIESIGGSYNDTFANLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGIMRQMEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSELADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1 131 - -
Gso12g0275 1877 Gene3D Hect, E3 ligase catalytic domain 1749 1875 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 10 59 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1029 1045 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1119 1151 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 652 709 - -
Gso12g0275 1877 Gene3D Hect, E3 ligase catalytic domains 1396 1639 - -
Gso12g0275 1877 SUPERFAMILY Hect, E3 ligase catalytic domain 1448 1870 IPR035983 GO:0004842
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1257 1291 - -
Gso12g0275 1877 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 47 1877 - -
Gso12g0275 1877 SMART arm_5 208 249 IPR000225 GO:0005515
Gso12g0275 1877 SMART arm_5 291 331 IPR000225 GO:0005515
Gso12g0275 1877 SMART arm_5 334 372 IPR000225 GO:0005515
Gso12g0275 1877 SMART hect_3 1467 1877 IPR000569 GO:0004842
Gso12g0275 1877 SUPERFAMILY ARM repeat 177 654 IPR016024 -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1173 1196 - -
Gso12g0275 1877 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 47 1877 IPR045322 GO:0006511|GO:0061630
Gso12g0275 1877 Gene3D - 184 658 IPR011989 -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 954 997 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 652 668 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1055 1089 - -
Gso12g0275 1877 MobiDBLite consensus disorder prediction 1117 1151 - -
Gso12g0275 1877 Pfam HECT-domain (ubiquitin-transferase) 1504 1877 IPR000569 GO:0004842
Gso12g0275 1877 MobiDBLite consensus disorder prediction 954 1097 - -
Gso12g0275 1877 ProSiteProfiles HECT domain profile. 1577 1877 IPR000569 GO:0004842
Gso12g0275 1877 MobiDBLite consensus disorder prediction 78 112 - -
Gso12g0275 1877 CDD HECTc 1456 1872 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0275 Gso-Chr12 2468367 2479301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0275 K10590 - gmx:100783336 3373.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0275 12 2468367 2479301 Gso11g0916 11 8233729 8244671 GST