Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0916 ATGGAAACTCGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACCACTCGTTCAAGCAAGCGCGCACGTCTCTCTTCTTCTTCTTCCGCTTCCGCCGCCGTGAACACTCGGTCCCGTGCATCCAATACTAAGGAACCCTTGCCCCCTAAAAATCCCCCTCCTCCTCTTCCTCCCATGGACTCTGCCAACGAATCCTCTGGCTCCCGCCGTGATCGCCGCAACAACAAAGAAAACTCCTCCGACAAGGGGAAGGAGAAAGAGCATGATGTCAGGATTAGGGACAGGGATGCGGCATTGAACATGGATGGCAGTGGTGGAGACGAGGACGATGACAATGACAATGACAGTGAAGGCGGTGTGGGGATTTTGCATCAAAACTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTTCTTCGGAAACTCGGTGCTGGTTTGGATGATCTGCTTCCATCGTCGGCTATGGGCTCTGCATCTTCCTCTCACCAGAGTGGGAGGCTGAAAAAGATCCTCTTTGGATTGCGGGCGGACGGCGAAGAAGGGCGGCAGGTCGAAGCATTGACACAGCTCTGTGAGATGCTTTCGATTGGGACTGAAGAATCGCTTAGTACATTCTCTGTTGATTCGTTTGTTCCTGTGCTCGTGGGGTTGTTGAATCACGAGAGCAACCCTGACATCATGCTTCTTGCTGCCAGAGCATTGACCCATCTCTGCGATGTGCTCCCTTCATCTTGTGCTGCGGTTGTGCATTATGGTGCAGTCTCAATCTTTTGTGCCAGGTTGCTCACAATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTTTGAAGAAGATCTCTCTGGAGCATCCCACTGCCTGCCTACGAGCAGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCAACAGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCTGTTCCTCTTCTGACAAACCTTCTTCAGTACCATGATTCCAAGGTTCTGGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCTTTTGCATCATCTCCAGACAAATTAGATGAGTTGTGCAACCATGGACTTGTAACACAAGCTACCTCCCTCATTTCTAACAGCAGTTCTGGAGGTGGTCAGGCTTCTCTCAGCACACCGACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACCTTATTACTTCTTGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCACCAGAACAGATATTTGAGATTGTAAACCTGGCGAATGAGCTTCTGCCCCCATTGCCACATGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTGTAAAGAAGTCTCCTTCTGGTAGCTCTGGGAAACAAGAAGACACTAATGGAAATGTTCCTGAGATATCGGCTCGTGAGAAACTATTAAATGATCAGCCTGAACTACTTAAGCAATTTGCGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGCCTTTCTGTCATTGGGAAATTGATGTATTTCAGCACGGCAGAGATGATCCAGTCTTTGTTGAGTGTGACAAATATATCAAGTTTCTTAGCTGGCGTCCTAGCATGGAAAGATCCACATGTTTTGCTTCCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCCGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTAGCCTCAAATTCAACCAATATCTCTACACAGGCATCTCCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGGAGTGGGAATTCCAATCCCGATGGAAATCCTTTGGACGATTTGAAAACTCCAGTTTCAGTAAATGTTGGTTCACCTCCAAGTTCTGTGGATATGCCAACATTAAATTCCAGTATTCGGTTATCTGTTAGTACAGCTGCCAAAGCTTTTAAAGATAAGTACTTTCCTTCAGATCCTGGGGCTGCTGAAGTGGGTATTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGATGATGAACAAAGGACTAATGGAAAGGGGGAATCTAAAACTTCTGGATTTGGTCCGGAAGAGTATTTAATTGGGATCATAGCTAACATGCTAAAGGAACTTGGCAAAGGAGATGGTGTATCTACTTTTGAATTCATTGGTAGTGGTGTTGTTGCAGCTCTGTTGAATTATTTTTCTTGTGGGTATTTCTCTAAAGATCGACCATTAGAAGCCCACCTTCCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCAGTTGCACTACCTTCTACTATTGAAGTTGGGACTGTGGCTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCCTTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCTAGGTCATCTAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCTTTATCTCAGCCCTTCAAGTTGCGGCTTTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCATCCAACGTTGTACTGGTTGATCCATTAGCAAGTTTAGCAGCGATTGAGGAATTTGTTTGGCCTCGTATCCAACGTAGTGAATCTGGTCAGAAGTCCACTGTAGCCACTGGGAATTCTGAATCTGGGACAACTCCTGCAGGAGCTGGTGTATCCTCTCCTACTACCCGTCGCCATTCTACTAGATCCAGATCATCTGTTAATATAGGTGATACATCTAGAAAGGAAATAACTCAAGATAAAAGTACAAGTTCTTCCAAGGGTAAGGGAAAAGTTGTATTAAAGCCTGCACAAGAGGAGGCAAGAGGACCTCAGACCAGAAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGATGCTCAAATGAAGCCTGTAAACGCTGACTCTACTTCTGAGGATGAAGATTTGGATATATCCCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGACGATATTTCTGATGATGAAGATGATGACCACGAAGATGTACTGAGGGATGATTCTCTTCCTGTTTGTTCACCTGACAAAGTACACGATGTGAAATTAGGCGACTTAGCGGAGGAGAGTAATGTTGCTCCTGCAACAAGTGATGGCCAGGCTAATGCTGCCTCAGGTTCTAGTAGCAAAGCTGGTACAGTCAGGGGATCAGACTCTACTGATTTTAGGAGTGGCTATAACTCAAGCTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGATCTGCCAATAGCAGAGGTATCAGGGGTGGAAGAGATCGACTAGGGCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATATTTACTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATTTATCAGGCAATTCAAAGGCAGCTTGTGCTAGATGATGATGAAAGATTTGCTGGCAGTAGTGACTATGTATCCAGTGACGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCATAGGGCTGAGAACCAGACAGATAGGACTCCCCCTGGAGGTTCAACCTCTAATGCTTCAAAATCTTGCAAATCTGGGTCTGTATCGAATTCTAGTTCCGAAGCCAAGCTGCATCAGACATCTGTACTAGATAGTATCTTGCAGGGAGAATTGCCCTGTGAACTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGCGGGTGCTTGAGGGTTTGAACCAACTTGCATCTCGTTTGAGGGCCCAAGTGGTTACTGATAGCTTTGCTGAGGGAAAAATTTTGGATTTAGATGAGCTAAGTGTTACCAGCGGTGCTAGGGTTCCTACAGAGGAATTTATAAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGCAGTGGGAGTCTTCCCTCGTGGTGTTACCAGTTATCTAAAGCGTGCCCTTTTTTGTTTCCTTTTGAGACCCGGCGACAGTATTTTTATTCAACTGCCTTTGGGTTATCTCGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCATGGATCAACAAATGAAAGAGAGGTCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTCTCTCGAAATCGCATTTTGGATTCTGCTGCTAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACCGGTCTGGGTCCCACTCTGGAGTTCTACACACTTCTCAGTCATGACTTACAAAAAATTATACTTGAAATGTGGAGATCAGGTTCTTCAGAGAAATATCAAATGAAAATTGATGGAGATGAAAAGAAAATGAAACGTAGTGAAGGCTCTTTTGTTGGAGATGGAGAACTTGTTCAAGCTCCTCTTGGGCTGTTTCCTCGACCTTGGTCTGCAAATGCTGATGCATCAGAGGGTACCCAATTTTTTAAAGTGATTGAATATTTCCGACTATTAGGCCGTGTAATGGCTAAGGCTCTTCAAGATGGACGCCTATTGGATTTACCAATGTCAGTGGCATTTTATAAGCTTGTTCTTGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCTGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGAAAACATTATATACAATCTACTGGTGGTAGCTACACCGATACCTTTGCTAATTTGCATTTTCGTGGGGCCCCAATAGAAGATCTCTGCTTGGACTTCACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTTGAGGCAACTGTTAAGACTGGAATCATGCGTCAAATGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTTCTCCCCAAGAACTGGATTACTTGCTTTGTGGCCGGAGAGAATTGTGGAAGACTGAGACACTAGCCGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCTGCCATAGTTAATTTACTCGGAATTATGGGAGAATTCACACCAGAGCAACAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGTTGCCTCCTGGTGGACTGGCAGTTCTAAATCCAAAATTAACGATTGTGAGGAAGCTTTCATCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGTCCTTCAGAATTAGCGGATGATGACTTGCCAAGTGTGATGACGTGTGCAAATTACCTTAAGCTTCCTCCTTATTCTACCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCGTGA 5619 0.4465 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAVNTRSRASNTKEPLPPKNPPPPLPPMDSANESSGSRRDRRNNKENSSDKGKEKEHDVRIRDRDAALNMDGSGGDEDDDNDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQSGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISLEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQATSLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPHGTISLPIISNMFLKGPIVKKSPSGSSGKQEDTNGNVPEISAREKLLNDQPELLKQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLLPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILASNSTNISTQASPAEKDNDSISGASSRSRRYRRRSGNSNPDGNPLDDLKTPVSVNVGSPPSSVDMPTLNSSIRLSVSTAAKAFKDKYFPSDPGAAEVGITDDLLHLKNLCMKLNAGDDEQRTNGKGESKTSGFGPEEYLIGIIANMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDRPLEAHLPKLRQQALTRFKLFIAVALPSTIEVGTVAPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSQPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFVWPRIQRSESGQKSTVATGNSESGTTPAGAGVSSPTTRRHSTRSRSSVNIGDTSRKEITQDKSTSSSKGKGKVVLKPAQEEARGPQTRNATRRRAALDKDAQMKPVNADSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPVCSPDKVHDVKLGDLAEESNVAPATSDGQANAASGSSSKAGTVRGSDSTDFRSGYNSSSRGAMSFAAAAMAGLGSANSRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVLDDDERFAGSSDYVSSDGSRLWGDIYTITYHRAENQTDRTPPGGSTSNASKSCKSGSVSNSSSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDSFAEGKILDLDELSVTSGARVPTEEFISSKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREVRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDLQKIILEMWRSGSSEKYQMKIDGDEKKMKRSEGSFVGDGELVQAPLGLFPRPWSANADASEGTQFFKVIEYFRLLGRVMAKALQDGRLLDLPMSVAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKHYIQSTGGSYTDTFANLHFRGAPIEDLCLDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKTGIMRQMEAFRAGFNQVFDISSLQIFSPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLGIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSELADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAISEGQGSFDLS* 1873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1115 1149 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1 131 - -
Gso11g0916 1872 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 64 1872 - -
Gso11g0916 1872 CDD HECTc 1451 1867 IPR000569 GO:0004842
Gso11g0916 1872 MobiDBLite consensus disorder prediction 10 54 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1027 1041 - -
Gso11g0916 1872 Gene3D Hect, E3 ligase catalytic domains 1391 1634 - -
Gso11g0916 1872 SUPERFAMILY Hect, E3 ligase catalytic domain 1443 1865 IPR035983 GO:0004842
Gso11g0916 1872 SMART arm_5 249 290 IPR000225 GO:0005515
Gso11g0916 1872 SMART arm_5 206 247 IPR000225 GO:0005515
Gso11g0916 1872 SMART arm_5 332 370 IPR000225 GO:0005515
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1116 1149 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 55 69 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 650 706 - -
Gso11g0916 1872 ProSiteProfiles HECT domain profile. 1572 1872 IPR000569 GO:0004842
Gso11g0916 1872 MobiDBLite consensus disorder prediction 949 995 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 650 666 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 74 111 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 949 1095 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1253 1286 - -
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1170 1189 - -
Gso11g0916 1872 Gene3D - 164 482 IPR011989 -
Gso11g0916 1872 Pfam HECT-domain (ubiquitin-transferase) 1499 1872 IPR000569 GO:0004842
Gso11g0916 1872 SMART hect_3 1462 1872 IPR000569 GO:0004842
Gso11g0916 1872 Gene3D Hect, E3 ligase catalytic domain 1744 1870 - -
Gso11g0916 1872 Gene3D - 527 654 IPR011989 -
Gso11g0916 1872 SUPERFAMILY ARM repeat 175 643 IPR016024 -
Gso11g0916 1872 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 64 1872 IPR045322 GO:0006511|GO:0061630
Gso11g0916 1872 MobiDBLite consensus disorder prediction 1053 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0916 Gso-Chr11 8233729 8244671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0916 K10590 - gmx:100804501 3380.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0275 12 2468367 2479301 Gso11g0916 11 8233729 8244671 GST