Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0248 ATGCCGAAGCCTTGTGACTTGAAAATCAACATTGATGGTCAGCAGATATTCCTTTTGAAAGAGAAGGTTATATCAAAATACTGTGGAGGGTTGAAGAAGATCTTGAATCACCAAAAGAGAAGATGTCATGTGAAGGAGTTGGGGATTAGAATCAATGATTTCCCTGGAGGACCAAAAGGGTTTGAGCTAGTTTCAATGTTCTGTTACAACAATGGAAAAATCCAAATCACTGTGGCTAATGTGTCTCTCCTCCACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAGGCATTCAGCAACAATCTCTTGCAACAAACAGAAACTTTTCTTGAGAGAATCTATTACTGGAAATGGAATGACATACTTGCAAGTCTCAAGAGTTGCCAGCTGTTTTATACATATGCAGATGGCTATGGTCTCTTGGAGAAGATCATTAGTGCCTTAGCAAAGTTTGTCCAGAATTCAGATTCAAACCTCCTCACTTCCTCGCCTTCGGCATCATCATGGTCATCTTCACCAGAAAGCAACTTTGCCAAGAGATTCTCTTTCTCATCCAAGAAAACTACCCCAGAAAAAATCAAGTCATGTTTGCCGCGCAAGGCATGGTGGTTTGATGATTTGGCAACTTTACCACCAACGATCATTGAGAAACTCTTCCAGACTATTGGAGCATACAAAGCTGATAACAAGGATTTAATCCTCACAAGATTTCTGTTGCATTATCTGAAAATAGCTACTCAAACCAAAATGGTTAATTGCAGAAACAGCAATGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGGGTCATATCTGTTGGTAAAGAGACATTTTCTTGCAGAGGCCTTTTTTGGGTACTAAGGATTGTATCTAAGTTTGGGTTGAGTAGAGACTGCAGAACTGAATTGGAGAAATTGATTGGTGGAATGCTTGAGCAAGCTACACTGGATGATCTTCTAGTCTCTGGGCATGACATGGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGTTAGATTATTTGTTGATATCAATGGTTCTGATGGACTGTCTTTACAGAAAGTGAAAAGGGTTGGTAGATTAATTGACAAGTATTTGAGAGAGATATCTCCTGACCAGAACCTCAAGATCTCTAAATTTCTTGGAGTAGCAGAATGCTTGCCAGACTCTGCAAGGGATTGCTATGATGGGGTCTACAAGGCCATTGACATCTATCTTGAGTCTCATCCAACTATCACATTTGAGGAAAGATCGAGACTGTGTAGATGTCTTAATTACAGCAAACTCAGCTTTGAAGCTTGTAAAGATCTGGCCAAAAACCCCAGAATACCTCCAAGGGTTGCAATGCAAGCTCTTATTTCTCAACAGCCAAAAATTTCAACAAGTGACCGTGTAACTGAGAGTCCAAGGATGAAGCATTCCCAAATAGTTTTGTACAATGAAGCCAGCAGAGAAAGCTTCTCCCAAGAGAGGAGAGATATGAGACTAAACATAGAGAAAATGCAATGGGGTGTAATAGAACTGGCTAAATTACGCAAGCAAACGAACGTTCAGATGCCACAGTTGTTTACCCATAATGTCTTGCTTAATCCTGCTCGTGCTTCATCCTCACCAAGATTTTGTTGA 1629 0.4021 MPKPCDLKINIDGQQIFLLKEKVISKYCGGLKKILNHQKRRCHVKELGIRINDFPGGPKGFELVSMFCYNNGKIQITVANVSLLHCCAVYLGMTEEAFSNNLLQQTETFLERIYYWKWNDILASLKSCQLFYTYADGYGLLEKIISALAKFVQNSDSNLLTSSPSASSWSSSPESNFAKRFSFSSKKTTPEKIKSCLPRKAWWFDDLATLPPTIIEKLFQTIGAYKADNKDLILTRFLLHYLKIATQTKMVNCRNSNEYAALAETAAYGVISVGKETFSCRGLFWVLRIVSKFGLSRDCRTELEKLIGGMLEQATLDDLLVSGHDMGVYYDVNLVIRLVRLFVDINGSDGLSLQKVKRVGRLIDKYLREISPDQNLKISKFLGVAECLPDSARDCYDGVYKAIDIYLESHPTITFEERSRLCRCLNYSKLSFEACKDLAKNPRIPPRVAMQALISQQPKISTSDRVTESPRMKHSQIVLYNEASRESFSQERRDMRLNIEKMQWGVIELAKLRKQTNVQMPQLFTHNVLLNPARASSSPRFC* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0248 542 Pfam NPH3 family 202 435 IPR027356 -
Gso12g0248 542 ProSiteProfiles NPH3 domain profile. 201 459 IPR027356 -
Gso12g0248 542 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 516 - -
Gso12g0248 542 PANTHER OS12G0117600 PROTEIN 2 516 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0248 Gso-Chr12 2192315 2195460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0248 6 463 EF-hand Containing Proteins AT3G44820 27.219 2.55e-53 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0248 - - gmx:100808259 1060.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0248 12 2192315 2195460 Gso11g0888 11 7954075 7957457 GST