Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0888 ATGCCGAAGCCTTGTGACTTGCAAATCAACATTGATGGTCAGCAGATATTCCTTTTGAAAGAGAAGGTCATATCAAAATACTGTGGAGGGTTGAAGAAACTATTGAATCACCAAAAGAGAAGATGTCATGTGAAGGAGTTGGGGATTAGAATCAATGATTTCCCTGGAGGACCAGAAGGGTTTGAGCTAGTTTCAAGGTTTTGTTACAGCAATGCCAAAATCCAGATCACTGTGGCTAATGTGTCTCTCCTTCACTGTTGTGCTGTTTATCTTGGAATGACTGAGGAATCATTCAGCAACAATCTCTTGCAACAAACAGAAACTTTTCTTGAGAGAATCTATCACTGGAAATGGAATGACATACTTGCAAGTCTCAAGAGTTGCCAGCTGTTTTATGCATATGCAGATGGCTATGGTCTCTTGGAGAAGATCATTAGTGTCTTGGCAAAGTTTGTCCAGAATTCAGATTCAAACCTCCTCACTTCCTCGCCTTCAGCATCGTCGTCCTCTTCTTCACCAGAAAGCAGTTTCGCCCAGAGATTCTCTTTCTCATCCAAGAAAACTACCCCAGAAAAAATCAAGTCAAGTTTGCCGCGCAAGGCGTGGTGGTTTGATGATTTGGCAACTTTACCACCAAAGATCATTGAGAAACTCTTCCAGACTATTGGAGCATACAAAGCTGATAACAAGGACTTAATCCTCACAAGATTTCTGTTGCATTATCTGAAAAATATAGCTACTCAAAGCAAAGTGGTTAATTGCAGGAACAGCAATGAGTATGCTGCTCTTGCAGAAACAGCTGCTTATGGGGTCATATCTGTTGGTAAAGAGATATTTTCTTGCAGAGGTCTTCTTTGGGTACTAAGGATTGTATCTAAGTTTGGGTTGAGTAGAGACTGCAGAACTGAATTGGAGAAATTGATTGGTGGAATGCTTGACCAAGCTACACTGGATGATCTTCTAGTCTCTGGACATGACATGGGAGTTTATTATGATGTTAATTTGGTGATAAGATTGGTTAGATTATTTGTTGATATCAATGGTTCTGATGGACTACAGAAAGTGAAAAGGGTTGGTAGATTAATTGACACGTATTTGAGAGAGATATCCCCTGACCACAACCTCAAGATCTCTAAATTTCTTGGAGTAGCAGAATGCTTGCCAGACACTGCAAGGGATTGCTATGATGGGGTCTACAAAGCCATTGACATCTATCTTGAGTCTCATCCAACTATCACATTTGAGGAAAGGTCGAGATTGTGTAGATGTCTTAATTACAGCAAACTCAGCTTTGAAGCTAGTAAAGATCTGGCCAAGAACCCCAGAATACCTCCAAGGGTTGCAATGCAGGCTCTTATTTCTCAACAACCAAAAATTTCAACAAGTGACTTAGTAACTGAGAGTCCAAGGATGAAGCACTCCCAATTAGTTTTGTCCAATGAAGCCAACAGAGAAAGCTTCTCCCAAGAGAGGAGAGATATGAAACTAAACATAGAGAAAATGCAATGGGGTGTAATAGAACTGGCCAAATTACGCAAGCAAATGAACGGTCAGGAGCCACAGTTGTTTACCCATAATGTCTTGCTTAATCCTGCTCGTGCTTCATCCTCACCAAGATTTTGTTGA 1626 0.4077 MPKPCDLQINIDGQQIFLLKEKVISKYCGGLKKLLNHQKRRCHVKELGIRINDFPGGPEGFELVSRFCYSNAKIQITVANVSLLHCCAVYLGMTEESFSNNLLQQTETFLERIYHWKWNDILASLKSCQLFYAYADGYGLLEKIISVLAKFVQNSDSNLLTSSPSASSSSSSPESSFAQRFSFSSKKTTPEKIKSSLPRKAWWFDDLATLPPKIIEKLFQTIGAYKADNKDLILTRFLLHYLKNIATQSKVVNCRNSNEYAALAETAAYGVISVGKEIFSCRGLLWVLRIVSKFGLSRDCRTELEKLIGGMLDQATLDDLLVSGHDMGVYYDVNLVIRLVRLFVDINGSDGLQKVKRVGRLIDTYLREISPDHNLKISKFLGVAECLPDTARDCYDGVYKAIDIYLESHPTITFEERSRLCRCLNYSKLSFEASKDLAKNPRIPPRVAMQALISQQPKISTSDLVTESPRMKHSQLVLSNEANRESFSQERRDMKLNIEKMQWGVIELAKLRKQMNGQEPQLFTHNVLLNPARASSSPRFC* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0888 541 ProSiteProfiles NPH3 domain profile. 201 458 IPR027356 -
Gso11g0888 541 Pfam NPH3 family 202 434 IPR027356 -
Gso11g0888 541 PANTHER OS12G0117600 PROTEIN 2 515 IPR043454 -
Gso11g0888 541 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 2 515 - -
Gso11g0888 541 SUPERFAMILY POZ domain 3 95 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0888 Gso-Chr11 7954075 7957457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0888 6 508 EF-hand Containing Proteins AT3G44820 26.619 3.68e-55 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0888 - - gmx:100795481 1050.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0248 12 2192315 2195460 Gso11g0888 11 7954075 7957457 GST