Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0239 ATGATTCTCCAACACGCTTCTCCCACCTCTCCACCCCTCTGCCCCTGTAACTTGTTCGCCAATTCCGCCTCCCTCAAATTCCGCAGAAAATGCACTGTCCTACTCTGCGCCGTTCCCTCCGACAACCCAAATTGGAACGCCGATTTCGCCAATTCCGCCCGCAGGACCGCCACAACCTTCGTCCTCAAACGAATTTCCAACCAACTCGAACCCCACAACACCACCACCACCAACGATAACGGTGTTATTGATTCCGAATTACAAGCAACACCGCCGGTTCAATTAGGTTCAAACTTCACCGCTTTCAGCGAGGATCCTATTGTGGATAAGCTGAGGACCCAGCTAGGGGTGATACACCCGATTCCCTCCCCTCCGATTAACCGCAACGTCGTCTTCCTGTTCGTCTTCTTCTTCTTCGTCGGCGTCGTGTTCGACAAATTGTGGACTTCGCGGCGGCGGAACAAAAATAACAGTGAAGATAGGTTGCGTGGCGGCGTGTGGCCGCAGGTGCCGACGAGCTTCTCGCTGTTTCTTGAGAAGGATTTACAGAGGAAGGAGTCGGTGGAGTGGGTGAACATGGTGCTGGGGAAGCTGTGGAAGGTCTATAGAGGCGGAATTGAGAACTGGATCATAGGGCTGCTTCAGCCTGTCATTGATAACCTCAAGAAGCCTGATTACGTGCAGAGGGTTGAGATTAAGCAGTTCTCTTTGGGGGATGAACCTTTGTCTGTTAGGAACGTTGAGCGCAGGACTTCTCGCAGAGTTAATGATTTGCAGTACCAGATAGGCCTTAGGTATACAGGTGGTGCTCGCATGCTGTTAATGCTTTCTCTGAAATTTGGCATCATTCCCATTGTTGTTCCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAATTAAGATTAATACCAACGGAACCTTGGGTGGGAGCTGCTTCATGGGCTTTTGTTTCCCTCCCAAAGATCAAGTTTGAGCTGTCTCCATTCCGTCTGTTCAATTTAATGGCAATTCCAGTTCTCTCGATGTTTTTGACTAAACTTCTAACTGAAGATTTACCTAAACTATTTGTACGCCCAAAGAAAATAGTTTTAGATTTCCAAAAGGGAAAAGCTGTTGGTCCAGTTGCTGGTGGTGCTAAATCTGGAGAAATGCAAGAAGGAAACAAGGATTCTGTTGGTGAACTATCTGTTACTCTGGTGGATGCTCGAAAGCTTTCTTATATTTTTTATGGCAAGACGGATCCTTATGTTATTCTTAGCCTTGGAAATCAAGTTATACGCAGCAAAAAGAACAGTCAAACTACTGTAATTGGACCCCCTGGAATGCCAATTTGGAATCAGGATTTTCACATGCTTGTTTCCAACCCTAGAAAGCAGAAGTTATTCATCCAAGTAAAGGATGCTCTAGGATTTGCAGATTTGACTATTGGTACAGGAGAGGTTGATTTAGGATCTCTTAAAGACACTGTTCCAACAGACAGAATTGTGGTTTTACAAGGAGGTTGGGGATTCTTAGGAAAGCGCTCTTCTGGGGAGATATTACTTCGGCTAACATATAAAGCATACGTGGAGGATGAGGAAGATGATAAAACTGAGGTGGATGCCATTTATACTGACATTTCTGATGACGAGTTGTCTGATTCAGAAGCAAATGGTACTAATGGGAAGGATGAAAGAGATTCTGTGTATGAAACAGATAAGGAGTCGTTTATGGATGTTTTGGCAGCATTAATTGTTAGCGAAGAATTTCAGGGGATAGTAGCATCTGAAACAGGGTTTAGCAAAGTTTTGGATAATGGCTCAAATGTTGGATCTAGAGTGTCAAATTCTCAAGTTCCCAATGTTGAACCAATTCCCTCTAGTTCTGATAATTCCGAAGGCTCTGGAGGGTCAGCTTTACTTTGGCTTGCTGTGATTACTAGCATATCACTACTAATTGCTCTCAATGTTGGGGGATCCAGTCTCTTCAATCCGTAA 1989 0.449 MILQHASPTSPPLCPCNLFANSASLKFRRKCTVLLCAVPSDNPNWNADFANSARRTATTFVLKRISNQLEPHNTTTTNDNGVIDSELQATPPVQLGSNFTAFSEDPIVDKLRTQLGVIHPIPSPPINRNVVFLFVFFFFVGVVFDKLWTSRRRNKNNSEDRLRGGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRVNDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAASWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTEDLPKLFVRPKKIVLDFQKGKAVGPVAGGAKSGEMQEGNKDSVGELSVTLVDARKLSYIFYGKTDPYVILSLGNQVIRSKKNSQTTVIGPPGMPIWNQDFHMLVSNPRKQKLFIQVKDALGFADLTIGTGEVDLGSLKDTVPTDRIVVLQGGWGFLGKRSSGEILLRLTYKAYVEDEEDDKTEVDAIYTDISDDELSDSEANGTNGKDERDSVYETDKESFMDVLAALIVSEEFQGIVASETGFSKVLDNGSNVGSRVSNSQVPNVEPIPSSSDNSEGSGGSALLWLAVITSISLLIALNVGGSSLFNP* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0239 662 Gene3D C2 domain 384 526 IPR035892 -
Gso12g0239 662 SMART C2_3c 398 499 IPR000008 -
Gso12g0239 662 CDD C2 399 493 - -
Gso12g0239 662 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 21 662 - -
Gso12g0239 662 Pfam C2 domain 397 493 IPR000008 -
Gso12g0239 662 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 184 371 IPR031468 GO:0008289
Gso12g0239 662 ProSiteProfiles C2 domain profile. 384 500 IPR000008 -
Gso12g0239 662 MobiDBLite consensus disorder prediction 545 566 - -
Gso12g0239 662 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 397 525 IPR035892 -
Gso12g0239 662 MobiDBLite consensus disorder prediction 608 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0239 Gso-Chr12 2115129 2122163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0239 374 577 Lipid Metabolism Gene Families AT3G61300 24.757 8.00e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0239 - - gmx:100806668 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0239 12 2115129 2122163 Gso11g0879 11 7888567 7897002 GST