Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0238 ATGGCTTCACCGGCGTGGTTGCCGCAGGAGGCGCAGCCACCTGTGTCCGGAGAAACGCCTCTTCCCATGGCTTCTTCCACCCCTAATTCTGCTCCTGCAACTCCTTCTACTGCTCCGGCACCGGCGTCGCCATTCGCTCATGGCATGCTTCAGAATGTTAACGCTTCTGGGAGTTCCCAGCTGTTATCGACGCATCCCGCGATTATATCCAATTCTGCAGTGAATCCCATGGTTGTTCAACCTCCAGGTGTCTCTTCACATGCCGCTCCTTCATTTTCATATAATATTCCCCAAAGTGGTGCCATTTTTTCTAGCAACCAGCAGCATGCACAATCTAGCACTGATGTTAGTAAATTGTCATCTGCGTCAAGCATCCCACATTCTGTCCCTGCTCATACTTCTACATCCCTAATGCCTCCACCCTCTGACCCTAATTATTGCCCAGCTACTTCATGGATGCCAACTGCCCTGTCTTTTCCTGTGCATCCAGTAATGCCTACTCAAGGGAATCCTGGTCCTCCTGGATTAGCATCATCTGCGATAATATCCTCCAATCCTGCTGCTCCATCCACAGGCACAGATTCTTCTCCAGCTGCATTTCTGAGACCAAACATGCCAACTCCAGCCATTGCATCAGATCCTACCGCCCCTCAGAAAGGCTTACCCTATCCATCCATACCTGCCTTGGCTGCTCCCCCTCAGGGACTTTGGTTACAGCCCCCACAGATGAGTGGTGTACTTAGGCCACCATATCTTCAATACCCTGCTCCTTTTCCTGGTCCCTTTCCATTTCCAGCACGTGGTGTTGCTCTCCCTGCTGTTCCAATACCTGATTCTCAACCTCCTGGTGTTACCCCTGTGGGTGCTGCCGGTGGCACTCCTACACCTTCCGCTTCCAGTTATCAGCTGAGGGGAACAACTGCTTTGCAAACTGAAGTTATTTCAGGGTCTGCTGATGATAAGAAGAAATTAAATTCCGTTGACACTTTGAATGAGGATGCTGCTAATAATGATCAATTGGATGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTATAATGCTGTGACAGGAGAATCAACATATCATAAACCTTCTGGCTTTAAAGGGGAGTCTCACCAAGTTTCTGCTCAGCCCACTCCAGTTTCAATGATTGATTTGCCTGGTACTGATTGGCGGTTGGTCTCCACTAGTGATGGAAAAAAATATTACTACAACAATCTAACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTCCAAATACTAATGTATTGTCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCAGCTCTTAAACCCTCTACTCTACAGAACTCATCATCAGCGTTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTATTACTCCCTCTTCTATTCATGCGCCATCAGTACAAATAGGACCTGAATCAAATGGTTCAAAAACAGTTGATTCTACAGCTAAGGGCGTGCAAGTAGATAATAACAAAGATAAACAAAAAGATACTAATGGTGATGCCGATGTCTCTGATACATCCTCAGATTCTGAAGATGAAGATAACGGGCCTTCAAAGGAGGAGTGCATCATTCAATTTAAGGAGATGCTTAAGGAGCGAGGAGTGGCACCATTCTCAAAGTGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGCTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCAGAAGAAGAACGCAAAGAAAAACGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCGGTTACTGGATGAAGCCTCAGAGGATATTAATTACAATACTGATTTTCAAACTTTCCGGAAGAAATGGGGAAACGATCCACGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCACCTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCTGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATGTCTTTTAACTCCCGTTGGGCCAGGGTTAAAGAAAGCTTAAGGGATGACCCAAGATATAAATCTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAACTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGACCAAAGCTAAAAGGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGGGAGCTGCGCAAAAGAAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTGCGACTAAAAATTCGGAGAAAGGAGGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGACCCTCTGGCATCATGGACGGAATCTAAGCCTAAATTAGAAAAGGATCCTCAAAGACGTGCAACTAATCCTGATCTTGATCCATCGGACACGGAAAAGCTCTTTCGGGAACATGTCAAGATGCTTCAGGAACGTTGTGCACATGAGTTTAGAGTTCTCTTGGCTGAAGTATTGACTTCTGATGCTGCATCTCAAGAAACCAACGATGGAAAAACAGTGCTTAATTCTTGGTCTACTGCTAAACGTCTTTTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGCCGCTATGCAGAGGATATGCTGCGGCGGCAAAAGGCATCTTATGATTCCAGGGAAGAGAAACATACAGATGCTAAAGGTAGAACTTATCTAGAATCTTCCAAACATCCATTGGAATCTGGGAGATCGCACGAGCGAAGATAA 2898 0.4503 MASPAWLPQEAQPPVSGETPLPMASSTPNSAPATPSTAPAPASPFAHGMLQNVNASGSSQLLSTHPAIISNSAVNPMVVQPPGVSSHAAPSFSYNIPQSGAIFSSNQQHAQSSTDVSKLSSASSIPHSVPAHTSTSLMPPPSDPNYCPATSWMPTALSFPVHPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAAFLRPNMPTPAIASDPTAPQKGLPYPSIPALAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTPTPSASSYQLRGTTALQTEVISGSADDKKKLNSVDTLNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYHKPSGFKGESHQVSAQPTPVSMIDLPGTDWRLVSTSDGKKYYYNNLTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVPNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSTLQNSSSALDLIKKKLQDSGTPITPSSIHAPSVQIGPESNGSKTVDSTAKGVQVDNNKDKQKDTNGDADVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDFQTFRKKWGNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDMSFNSRWARVKESLRDDPRYKSVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKEAVTSFQALLVETIKDPLASWTESKPKLEKDPQRRATNPDLDPSDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETNDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASYDSREEKHTDAKGRTYLESSKHPLESGRSHERR* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0238 965 MobiDBLite consensus disorder prediction 104 142 - -
Gso12g0238 965 ProSitePatterns WW/rsp5/WWP domain signature. 343 368 IPR001202 GO:0005515
Gso12g0238 965 PANTHER TRANSCRIPTION ELONGATION REGULATOR HOMOLOG 88 963 - -
Gso12g0238 965 SMART FF_2 697 751 IPR002713 -
Gso12g0238 965 SMART FF_2 800 857 IPR002713 -
Gso12g0238 965 SMART FF_2 629 684 IPR002713 -
Gso12g0238 965 SMART FF_2 562 616 IPR002713 -
Gso12g0238 965 CDD WW 393 422 IPR001202 GO:0005515
Gso12g0238 965 Gene3D FF domain 858 924 IPR036517 -
Gso12g0238 965 Gene3D FF domain 797 857 IPR036517 -
Gso12g0238 965 ProSiteProfiles FF domain profile. 697 751 IPR002713 -
Gso12g0238 965 MobiDBLite consensus disorder prediction 529 545 - -
Gso12g0238 965 Gene3D - 379 437 - -
Gso12g0238 965 Gene3D FF domain 547 619 IPR036517 -
Gso12g0238 965 SMART ww_5 338 370 IPR001202 GO:0005515
Gso12g0238 965 SMART ww_5 390 422 IPR001202 GO:0005515
Gso12g0238 965 ProSiteProfiles FF domain profile. 629 684 IPR002713 -
Gso12g0238 965 Gene3D FF domain 620 688 IPR036517 -
Gso12g0238 965 Gene3D FF domain 689 763 IPR036517 -
Gso12g0238 965 MobiDBLite consensus disorder prediction 494 561 - -
Gso12g0238 965 SUPERFAMILY FF domain 690 756 IPR036517 -
Gso12g0238 965 MobiDBLite consensus disorder prediction 167 221 - -
Gso12g0238 965 MobiDBLite consensus disorder prediction 172 200 - -
Gso12g0238 965 SUPERFAMILY FF domain 859 930 IPR036517 -
Gso12g0238 965 Pfam WW domain 342 368 IPR001202 GO:0005515
Gso12g0238 965 ProSiteProfiles FF domain profile. 562 616 IPR002713 -
Gso12g0238 965 SUPERFAMILY FF domain 793 862 IPR036517 -
Gso12g0238 965 MobiDBLite consensus disorder prediction 928 965 - -
Gso12g0238 965 ProSiteProfiles WW/rsp5/WWP domain profile. 395 422 IPR001202 GO:0005515
Gso12g0238 965 Coils Coil 749 804 - -
Gso12g0238 965 MobiDBLite consensus disorder prediction 104 140 - -
Gso12g0238 965 Pfam FF domain 866 921 IPR002713 -
Gso12g0238 965 Pfam FF domain 568 613 IPR002713 -
Gso12g0238 965 Pfam FF domain 632 679 IPR002713 -
Gso12g0238 965 Pfam FF domain 700 748 IPR002713 -
Gso12g0238 965 Pfam FF domain 803 854 IPR002713 -
Gso12g0238 965 MobiDBLite consensus disorder prediction 1 45 - -
Gso12g0238 965 CDD WW 343 368 IPR001202 GO:0005515
Gso12g0238 965 MobiDBLite consensus disorder prediction 824 846 - -
Gso12g0238 965 MobiDBLite consensus disorder prediction 758 789 - -
Gso12g0238 965 SUPERFAMILY FF domain 621 690 IPR036517 -
Gso12g0238 965 ProSitePatterns WW/rsp5/WWP domain signature. 395 420 IPR001202 GO:0005515
Gso12g0238 965 ProSiteProfiles WW/rsp5/WWP domain profile. 337 370 IPR001202 GO:0005515
Gso12g0238 965 SUPERFAMILY WW domain 342 372 IPR036020 GO:0005515
Gso12g0238 965 MobiDBLite consensus disorder prediction 19 33 - -
Gso12g0238 965 Gene3D - 339 378 - -
Gso12g0238 965 SUPERFAMILY WW domain 394 426 IPR036020 GO:0005515
Gso12g0238 965 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 88 963 IPR045148 GO:0003712|GO:0070063
Gso12g0238 965 MobiDBLite consensus disorder prediction 495 528 - -
Gso12g0238 965 ProSiteProfiles FF domain profile. 800 857 IPR002713 -
Gso12g0238 965 SUPERFAMILY FF domain 557 622 IPR036517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0238 Gso-Chr12 2099486 2113826 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0238 K12824 - gmx:100806139 1670.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0238 12 2099486 2113826 Gso11g0872 11 7816673 7828289 GST