Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0872 ATGGCTTCACCGGCGTGGTTGCCGCAGGAGTCGCAGCCACCAGTGTCTGGTGAAACGCCTCTTCCCATGGCTTCTTCCGCTCATACAACTCCTTCTACTGCTCATGCAAAATTATTTAACGCAACCGCGTTTGTAGCTCCGGCACCGGCACCGCCATTCGCTTACGGCATGCTTCAGAATGTTAACGCTTCCGGAAGTTCTCAACAGTCATCGACGCATCCTGGGATGAAATCCAATTCTGCAGTGAATCCCATGGTTGTTCAACCTCCAGGTGTCTCTTTACATGCTGCTCCTTCATTTTCATATAATATTCCCCAAAGTGGTGCCATTTTTTCTAGCAACCAACAGCATGCACAATCTAGCACTAACATGCCAGATTCTGTTGCACAGGATGTTGGTAAATTGTCATCTGCGTCAAGTATCCCACATTCTGTCCCTGCTCATACTTCTACATCCATAATGCCTCCACCCTCTGACCCTAATTATCGCCCAGCTACTTCATGGATGCCAACTGCCATGTCTTTTCCCGTGCTTCCTGTAATGCCTACTCAAGGGAATCCTGGCCCTCCTGGATTAGCATCATCTGCAATAATATCCTCCAATCCTGCTGCTCCATCCACAGGCACAGATTCTTCTCCAGCTGCATTACTGAGACCAAACATGCCAACTTCAGCCATTGCATCAGATCCTACCGCCCCTCAGAAAGGCTTACCCTATCCATCTGTGCCTGCCATGGCTGCTCCCCCTCAGGGACTTTGGTTACAGCCCCCACAGATGAGTGGTGTACTTAGGCCACCATATCTTCAATACCCTGCTCCTTTTCCTGGTCCCTTTCCATTTCCAGCACGTGGTGTTGCTCTCCCTGCTGTTCCGATACCTGATTCTCAACCTCCTGGTGTTACACCTGTGGGTGCTGCTGGTGGCACTTCTACACCTTCTTCTAGTCATCAGCTGAGGGGAACAACTGCTTTGCAAACAGAAGTTATTTCAGGGCCTGCTGATGATAAGAAGAAATTAAATTCCGTTGACACTGTCAATGAGGATGCTGCTAATAACGATCAATTAGATGCCTGGACAGCCCACAAGACTGAAGCAGGAATTATATACTATTACAATGCTGTGACAGGAGAATCAACATATGATAAACCTGCTGGCTTTAAAGGGGAGTCTCACCAAGTTTCTGCTCAGCCCATTCCAGTTTCAATGATGGATTTGCCTGGTACTGATTGGCGGTTGGTCTCCACTAGTGATGGAAAAAAATACTACTACAACAATCGGACCAAGACTAGCTGCTGGCAAATCCCAAATGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTACAAAAGATCATTTAATGTCAGTTTCAAATACTAATGTATTGTCCGATAGAGGGTCAGGAATGGTTACTCTGAATGCTCCTGCTATTAATACTGGTGGTCGTGATGCTGCTGCTCTTAAACCCTCTAGTCTACAGAACTCGCCATCGGCTTTGGATTTGATCAAGAAGAAATTGCAGGACTCAGGAACACCTGTTGCTTCCTCTTCTATTCCTGCCCCATCTGTACAAACAGGACCTGAATCAAATGGTTCAAAAACAGTTGATTCTACAGCTAAGGGCTTGCAAGTAGATAATAACAAAGATAAAGCAAAAGATACTAATGGTGATGCTAATGTCTCTGATACATCCTCAGATTCTGAAGATGAAGATAATGGGCCTTCGAAGGAGGAGTGCATCATTCAATTTAAGGAGATGCTTAAGGAGCGAGGAGTGGTACCATTCTCAAAGTGGGAGAAAGAATTGCCAAAGATAGTATTTGATCCACGTTTTAAGGCCATCCCAAGTTATTCTGCTAGGAGATCCTTGTTTGAGCATTATGTTAAAACTCGTGCAGAAGAAGAACGTAAAGAAAAACGTGCTGCACAGAAGGCTGCAATTGAAGGATTTAAGCGGTTACTGGATGAAGCCTCAGAAGATATTAATTACAATACTGATTATCAAACTTTCCGGAAGAAATGGAGAAATGATCCACGGTTTGAGGCATTGGACCGCAAGGAACAAGAGCACCTATTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCTGCTGAAGAAAAGGCTCAAGCAATGCGTGCAGCTGCTGCTGCCAGTTTTAAGTCAATGCTTAAAGAGCGAGGAGATATATCTTTTAACTCCCGTTGGTCCAGGGTCAAAGAAAATTTAAGGGATGACCCAAGATATAAATGTGTGAGGCATGAGGATAGGGAAGTTTTGTTCAATGAGTATATATCTGAACTGAAAGCTGCTGAACATGCAGCAGAAAGAGAGACCAAAGCTAAAATGGAGGAGCAGGACAAGCTCAGGGAAAGAGAACGGGAGCTGCGCAAAAGAAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTGCGACTAAAAATTCGAAGAAAGGACGCAGTTACTTTATTTCAAGCTTTACTTGTGGAGACAATCAAAGACCCTCTGGTATCATGGACGGAATCTAAGCCTAAATTAGAAAAGGATGCTCAAAGACGTGCAACTAATCCTGATCTTGATCCATTGGACACGGAAAAGCTCTTTCGGGAACATGTCAAGATGCTTCAGGAACGTTGTGCGCACGAGTTTAGAGTTCTCTTAGCTGAAGTATTGACTTCTGATGCTGCATCTCAAGAAACTGACGATGGAAAAACAGTGCTTAATTCTTGGTCTACAGCTAAACGTCTTTTAAAATCTGATCCAAGATATAACAAAGTTCCAAGAAAAGAAAGAGAAGCATTGTGGCGCCGCTATGCTGAGGATATGCTGCGGCGGCAAAAGGCATCTCATGATTCCAGGGAAGAGAAACATACAGATGCTGAAGGTAGAAATTATCTAGAATCTTCCAAACATCCATTTGAATCTGGGAGATCGTACGAGCGAAGATAA 2943 0.4444 MASPAWLPQESQPPVSGETPLPMASSAHTTPSTAHAKLFNATAFVAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVVPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAAQKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKMEEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRRQKASHDSREEKHTDAEGRNYLESSKHPFESGRSYERR* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0872 980 MobiDBLite consensus disorder prediction 775 798 - -
Gso11g0872 980 SUPERFAMILY WW domain 357 387 IPR036020 GO:0005515
Gso11g0872 980 Pfam WW domain 357 383 IPR001202 GO:0005515
Gso11g0872 980 CDD WW 358 383 IPR001202 GO:0005515
Gso11g0872 980 ProSiteProfiles FF domain profile. 644 699 IPR002713 -
Gso11g0872 980 SUPERFAMILY FF domain 808 877 IPR036517 -
Gso11g0872 980 MobiDBLite consensus disorder prediction 942 980 - -
Gso11g0872 980 Gene3D FF domain 812 872 IPR036517 -
Gso11g0872 980 Gene3D FF domain 873 939 IPR036517 -
Gso11g0872 980 Gene3D FF domain 562 634 IPR036517 -
Gso11g0872 980 Gene3D - 354 393 - -
Gso11g0872 980 SUPERFAMILY FF domain 572 637 IPR036517 -
Gso11g0872 980 MobiDBLite consensus disorder prediction 510 576 - -
Gso11g0872 980 Pfam FF domain 583 628 IPR002713 -
Gso11g0872 980 Pfam FF domain 881 936 IPR002713 -
Gso11g0872 980 Pfam FF domain 715 763 IPR002713 -
Gso11g0872 980 Pfam FF domain 647 694 IPR002713 -
Gso11g0872 980 MobiDBLite consensus disorder prediction 1 31 - -
Gso11g0872 980 SUPERFAMILY WW domain 409 441 IPR036020 GO:0005515
Gso11g0872 980 PANTHER TRANSCRIPTION ELONGATION REGULATOR HOMOLOG 122 976 - -
Gso11g0872 980 MobiDBLite consensus disorder prediction 138 157 - -
Gso11g0872 980 SMART FF_2 712 766 IPR002713 -
Gso11g0872 980 SMART FF_2 812 872 IPR002713 -
Gso11g0872 980 SMART FF_2 577 631 IPR002713 -
Gso11g0872 980 SMART FF_2 644 699 IPR002713 -
Gso11g0872 980 PANTHER TRANSCRIPTION ELONGATION REGULATOR 1 122 976 IPR045148 GO:0003712|GO:0070063
Gso11g0872 980 SUPERFAMILY FF domain 636 705 IPR036517 -
Gso11g0872 980 SUPERFAMILY FF domain 705 771 IPR036517 -
Gso11g0872 980 ProSiteProfiles WW/rsp5/WWP domain profile. 410 437 IPR001202 GO:0005515
Gso11g0872 980 MobiDBLite consensus disorder prediction 510 543 - -
Gso11g0872 980 CDD WW 408 437 IPR001202 GO:0005515
Gso11g0872 980 ProSiteProfiles FF domain profile. 712 766 IPR002713 -
Gso11g0872 980 SMART ww_5 353 385 IPR001202 GO:0005515
Gso11g0872 980 SMART ww_5 405 437 IPR001202 GO:0005515
Gso11g0872 980 ProSiteProfiles WW/rsp5/WWP domain profile. 352 385 IPR001202 GO:0005515
Gso11g0872 980 MobiDBLite consensus disorder prediction 187 216 - -
Gso11g0872 980 ProSiteProfiles FF domain profile. 577 631 IPR002713 -
Gso11g0872 980 ProSitePatterns WW/rsp5/WWP domain signature. 358 383 IPR001202 GO:0005515
Gso11g0872 980 MobiDBLite consensus disorder prediction 138 156 - -
Gso11g0872 980 ProSitePatterns WW/rsp5/WWP domain signature. 410 435 IPR001202 GO:0005515
Gso11g0872 980 Coils Coil 767 819 - -
Gso11g0872 980 Gene3D - 394 451 - -
Gso11g0872 980 Gene3D FF domain 635 703 IPR036517 -
Gso11g0872 980 Gene3D FF domain 704 778 IPR036517 -
Gso11g0872 980 SUPERFAMILY FF domain 867 945 IPR036517 -
Gso11g0872 980 MobiDBLite consensus disorder prediction 188 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0872 Gso-Chr11 7816673 7828289 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0872 K12824 - gmx:100815386 1843.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0238 12 2099486 2113826 Gso11g0872 11 7816673 7828289 GST