Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0236 ATGGCGAATGAGGGAAGCGACATTGACGAAGTGAACTATGCGTTGGATGGCGTGGGAGAAGAAGAAGAGGACGAAAATGCAGCACAGGAGGAGGATGACAATGACATGGAAGAAGATGAAGAGGAATATACTTTCAGGTTCAAAACCGGGATGAATCCTTTGGACTTTGTTGATGATAATGATGATTCTGGCATTCAACCCTACCAGCGGTTCGTGCGTCTTGAACGGGAAGCCCTTGCTGATAAAAAGCGAAAAGCACCTGAACAATGCCATAGTGAAGAACCACCTTCTAAGATGGCCAGGGAAGGTGATATTTCTGGGGCAAAGATAGCTGAGATAATGGAAGCAATGGATTATTATGGTATGCGCAAGAGATCGAGAAAGCCTAAAAAGAGAGGCAGGCGAAAAGGATCAAAGAATAGAGTTGACCCTAAGCTAACACAGATGCAGGGTGATGCCACGTTTCACTATGCATGTGGCGATTATGACCGGGCTAAAGCTGTGTTGTGTGAAGTTATTAGGCTGGCACCAAATTTGCATGAGTCGTATCACACCCTTGGACTTGTCTATACTTCACTCCAGGATTATAAAAGAGCTATGGCCTTATACTTGATTGCTGCTCATTTGGATCCAAAAGAGTCACCTCTTTGGAAAACGATTTTTACCTGGTCCATAGAACAAGGTTATGTTGATCAAGCCGGTTATTGTCTTTTAAAAGCAATAAAAGCAGATCCCAAAGATGTTACTCTTAGATTTCATCTTGCAAGGCTTTATGCTGAACTTGGACATTATCAAAAAGCTGCTGTGACATATGAGCAAGTGCATAAACTCTGTTGTGAGAATATTGATGCACTGAAAGCAGCAGCTAAGTTCTACAAAAAATGTGGTCAAGTTGAATACTCCGTTCAAATTCTTGAAGACTATATTAAGAGTCAACCTGATGGAGCAAATGTAAGTGTAGTTGATCTGCTGGGTACCGTATTGATGGAAACTAAGGCACATGATAGAGCTCTGCAGCATATTGAACATGCTCAAACAGTAAATGCGAGGAAAGATTTACCTTTGAATTTGAAAATTAAGGCCGGAATTTGCCATGCTCATCTTGGAAACATGGAGATGGCTCAGGTTCTCTTTAATGATTTGAAACCAGAGAATGCAAGCAAGCATATTGACTTGGTTACTAAGGTTGCAGACTCATTAATGGGTCTTGAACATTATAATCCTGCATTGAATTATTATTTGATGTTGGAAGGAAATATTGAAAAAGAAAATGGTCTTCTATATCTGAAAATTGCTAGGTGTTATATGTCCCTGAAAGAAAGGTCACAAGCAATTCTCTTTTATTCCAAAGCTCTTGAAACACTACAGGATGATGTTGATGCACGCATAACTCTAGCTTCGCTTCTGCTTGAAGAGGCAAAAGAAGATGAAGCAATTTCCTTGCTGTCTCCTCCAAAGGATTCTGATTTTGGTGAAGCACCTTCTGAAAAGTCAAATAGATGGTGGGCTGATATAAGAATAAAACTGAAGCTCTGCAACATTTATTGGAATAGAGGGACGCTTGATGATTTTGTGGATACAATTTTCCCTTTGGTTCGTGAATCATTGTATGTTGCAACTCTTCGACAGAAGGGTAAATCAAAAAAGCGACTCTCCAAAAGAGATCTGGTTGAAAGGGTTAGGGTCCTGGATGGTCCGGAAAAGGATAATGTATTTCGAGGATTTAGACCAGTAGCTGCACCATCTGACCTGTTGAAAGCTTCCAGGGCAAAAAAGTTGCTCCAGAAGAAGGCAATTGAAAAGGAGAAAAGAAAAGCTGAGGCACTGGCCTCTGGAATTGACTGGCTAAGTGATGATTCAGATGATGAGCCTCAGAAAGAAAACAGAGAACCTCCCTTGTGTAATCTTCTCAAAGATGAAGAACATCACCAGCTAATAATAGATTTGTGCAAGGCATTAGCATCCTTGCAAAGGTATTGGGAAGCACTGGAGATTATTAATCTCTCTCTAAGATTGGCCCATACATCTCTGTCTACTGAAAAGAAAGAGGAGCTTCGATCTCTTGGAGCTCAAATGGCATACAACACCACGGATCCTAAACATGGGTTTGATTGTGTAAAATACATTGTTCAGCAACATCCACACGGTGTTGCTGCTTGGAATTGCTACTACAAGGTTATCTCAAGATTGGAAAACCGAGATACAAGACATTACAAATTTGTACGTGGTATGCAAGGAAAGTTTGTGGATTGTGTGCCTCCTATCCTCATTTCTGGACATCAGTTTACCATATGTAGCCATCATCAAGACGCAGCAAGGAAATACCTTGAAGCTTATAAACTATTGCCAGAGAATCCTTTGGTTAATCTTTGTGTTGGAACAGCCTTGATCAACTTAGCATTGGGTTTCAGACTTCAAAATAAGCATCAATGTGTTGTACAAGGTTTAGCATTCCTCTACAATAATATGAGAATCTGCGAGAACAGCCAGGAATCCTTGTACAACATAGCTCGGGCATTCCATCATGTTGGACTTGTAACTCTGGCGGCTTTTTATTATGAGAAAGTTATTGCTATTTGTGAGAAAGACTATCCAATTCCAAAACTTCCCAATGAAAATCCCGATAGCATCGAAACTCACAAACCTGGTTACTGTGACCTTCGCAGAGAGGCAGCTTACAATTTGCATTTAATCTACAAAAAAAGTGGTGCTCTTGATCTTGCTAGGCAAGTTCTCAAAGATCATTGTACCTTGTGA 2757 0.4055 MANEGSDIDEVNYALDGVGEEEEDENAAQEEDDNDMEEDEEEYTFRFKTGMNPLDFVDDNDDSGIQPYQRFVRLEREALADKKRKAPEQCHSEEPPSKMAREGDISGAKIAEIMEAMDYYGMRKRSRKPKKRGRRKGSKNRVDPKLTQMQGDATFHYACGDYDRAKAVLCEVIRLAPNLHESYHTLGLVYTSLQDYKRAMALYLIAAHLDPKESPLWKTIFTWSIEQGYVDQAGYCLLKAIKADPKDVTLRFHLARLYAELGHYQKAAVTYEQVHKLCCENIDALKAAAKFYKKCGQVEYSVQILEDYIKSQPDGANVSVVDLLGTVLMETKAHDRALQHIEHAQTVNARKDLPLNLKIKAGICHAHLGNMEMAQVLFNDLKPENASKHIDLVTKVADSLMGLEHYNPALNYYLMLEGNIEKENGLLYLKIARCYMSLKERSQAILFYSKALETLQDDVDARITLASLLLEEAKEDEAISLLSPPKDSDFGEAPSEKSNRWWADIRIKLKLCNIYWNRGTLDDFVDTIFPLVRESLYVATLRQKGKSKKRLSKRDLVERVRVLDGPEKDNVFRGFRPVAAPSDLLKASRAKKLLQKKAIEKEKRKAEALASGIDWLSDDSDDEPQKENREPPLCNLLKDEEHHQLIIDLCKALASLQRYWEALEIINLSLRLAHTSLSTEKKEELRSLGAQMAYNTTDPKHGFDCVKYIVQQHPHGVAAWNCYYKVISRLENRDTRHYKFVRGMQGKFVDCVPPILISGHQFTICSHHQDAARKYLEAYKLLPENPLVNLCVGTALINLALGFRLQNKHQCVVQGLAFLYNNMRICENSQESLYNIARAFHHVGLVTLAAFYYEKVIAICEKDYPIPKLPNENPDSIETHKPGYCDLRREAAYNLHLIYKKSGALDLARQVLKDHCTL* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0236 918 MobiDBLite consensus disorder prediction 80 101 - -
Gso12g0236 918 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Gso12g0236 918 Pfam Tetratricopeptide repeat 428 453 IPR019734 GO:0005515
Gso12g0236 918 SUPERFAMILY TPR-like 154 480 IPR011990 GO:0005515
Gso12g0236 918 MobiDBLite consensus disorder prediction 1 42 - -
Gso12g0236 918 SMART tpr_5 318 351 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 248 281 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 425 458 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 830 863 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 643 676 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 146 179 IPR019734 GO:0005515
Gso12g0236 918 SMART tpr_5 180 213 IPR019734 GO:0005515
Gso12g0236 918 SUPERFAMILY TPR-like 359 799 IPR011990 GO:0005515
Gso12g0236 918 Coils Coil 20 40 - -
Gso12g0236 918 Gene3D Tetratricopeptide repeat domain 579 917 IPR011990 GO:0005515
Gso12g0236 918 MobiDBLite consensus disorder prediction 122 145 - -
Gso12g0236 918 Gene3D Tetratricopeptide repeat domain 355 528 IPR011990 GO:0005515
Gso12g0236 918 Gene3D Tetratricopeptide repeat domain 146 354 IPR011990 GO:0005515
Gso12g0236 918 Pfam Tetratricopeptide repeat 236 267 - -
Gso12g0236 918 MobiDBLite consensus disorder prediction 14 40 - -
Gso12g0236 918 ProSiteProfiles TPR repeat profile. 180 213 IPR019734 GO:0005515
Gso12g0236 918 PANTHER TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED 23 917 IPR039340 GO:0006383
Gso12g0236 918 SUPERFAMILY TPR-like 759 913 IPR011990 GO:0005515
Gso12g0236 918 MobiDBLite consensus disorder prediction 124 139 - -
Gso12g0236 918 Pfam Tetratricopeptide repeat 160 213 - -
Gso12g0236 918 MobiDBLite consensus disorder prediction 80 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0236 Gso-Chr12 2033432 2058481 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0236 K15201 - gmx:100804533 1786.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0236 12 2033432 2058481 Gso11g0867 11 7758891 7776794 GST