Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0231 ATGAAGAACCTGAACATCTCTTTGTGCATGCTTCTCGTAGCTCTTGTGCGGTTAGGGGGAAGTGCACCCTCTGGCTTCAACTATGGTGATGCTCTTGATAAGAGTTTGATGTTCTTTGAAGCACAGAGGTCTGGTAAGTTACCACTGCCGCAGCGAGTCAAATGGCGTGGTGATTCTGGTCTCCAAGATGGATTTCAACAAGGAGTAGACCTGGTGGGTGGGTACTATGATGCAGGAGATCATGTGAAATTTGGGTTGCCAATGGCCTACAGTGTCACAATGCTTGCATGGGGGGCCATTGAGTTCAACAAGGAAATCGCTGACTTGAACCAAATGGGACAGGCATTATGGGCAATTAAATGGGGAACTGACTACTTTATCAAAGCTCACACTCAGCCTAATGTTCTTTGGGGACAGGTGGGAGATGGAGTTTCTGATCATTACTGCTGGGAGCGTGCTGAAGACATGACAACTTCAAGAGGTGCCTACAAAATTGATGAACAACACCCTGGCTCAGATCTGGCAGGTGAAACTGCAGCTGCATTGGCTGCTGCAGCTATAGCTTTCAGGCCCTACAACTCTTCTTACTCTAATCTCCTGCTAGTTCATGCAAAACAGCTCTTCACATTTGCAGATAGGTTCAGAGGTCTCTATGATGACTCCATATCAAGTGCTCAGCAATTCTATACTTCTTCCGGTTACTCGGATGAATTGTTGTGGGCTGCCACTTGGCTGCACCAAGCAACCGGTGATGAATACTACATAAAGTATGTAGTGGACAATGCTATGTATATGGGAGGAACTGGCTGGGCAGTAAAAGAGTTTTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTATCAAAGGTGTTACTAGAAGGAAAGGCTGGTGCTTACGCTGCCACACTAAAGCAATACCAGGCCAAGGCAGAATATTTTACCTGCGCTTGCTTGCAAAAGAATGATGGTTACAATGTCCAAAAAACACCAGGTGGCTTACTATACGTGCGTGATTGGAACAACATGCAGTATGTTTCTTCTGCTGCATTCCTTTTAGCTGTTTACTCTAATTACCTATCAGCAACAAAATCACAGCTCAACTGTCCAGATGGACAAACTCAGCCTCAGGAGCTCCTCAATTTTGTCAAGTCACAGGCTGACTATATCCTTGGTAAAAACCCTGCGGATGTGAGCTACTTGGTAGGATATGGAGCAAAATATCCTCTTCATGTTCACCACAGAGGTGCTTCCATTGCTTCAATCTTTGCTCTACACTATGAGGTTGGCTGCACCCAAGGATTTGAGACGTGGTATAACCGTGCTGAGCCAAATCCTAATGTCATCTGCGGTGGCCTCGTGGGTGGTCCAGATAAAAATGATGACTTCTCTGATGAAAGATCCAATTATGAACAAACTGAGCCTACAATTTCAGGTTCTGCTCCTCTTGTAGGCATCTTCGCTAAACTGCAGAGTTTGTATGGTAATCATAATATAGGTGAAGGTTACAACCATAATGAATCACCAGTGCCCCAGCAAAAAACACCAACCTTTGCACCAACATCTATTGGATTGACAGGTACAAATCCAGGGAAAGCAACAGTGTCCAAGACATCATCAGAATCAGAAGGTGCCGCAGTTGAATTCCTTCACTCGATAAGTAGCTCATGGACTGTTGGAGGTGCAACTTATTACCGTCACAGGGTGATAATCAAGAACACTTCTTCAAAGCCAATCTCAGATCTTAAGTTGGTGATTAAGGATCTCTCAGGGTCTTTATGGGGTCTCTCTCCAACAGAAGAAAAGGACACCTATGAACTTCCTCAATGGCACAAGGTCTTGAATCCTGGCTCCGAATGTATATTTGTATATGTTCAAGGCGGACCCCAGGCTAAAGTCTCGATTAAAAGCTTACATTGA 1920 0.4484 MKNLNISLCMLLVALVRLGGSAPSGFNYGDALDKSLMFFEAQRSGKLPLPQRVKWRGDSGLQDGFQQGVDLVGGYYDAGDHVKFGLPMAYSVTMLAWGAIEFNKEIADLNQMGQALWAIKWGTDYFIKAHTQPNVLWGQVGDGVSDHYCWERAEDMTTSRGAYKIDEQHPGSDLAGETAAALAAAAIAFRPYNSSYSNLLLVHAKQLFTFADRFRGLYDDSISSAQQFYTSSGYSDELLWAATWLHQATGDEYYIKYVVDNAMYMGGTGWAVKEFSWDNKYAGVQILLSKVLLEGKAGAYAATLKQYQAKAEYFTCACLQKNDGYNVQKTPGGLLYVRDWNNMQYVSSAAFLLAVYSNYLSATKSQLNCPDGQTQPQELLNFVKSQADYILGKNPADVSYLVGYGAKYPLHVHHRGASIASIFALHYEVGCTQGFETWYNRAEPNPNVICGGLVGGPDKNDDFSDERSNYEQTEPTISGSAPLVGIFAKLQSLYGNHNIGEGYNHNESPVPQQKTPTFAPTSIGLTGTNPGKATVSKTSSESEGAAVEFLHSISSSWTVGGATYYRHRVIIKNTSSKPISDLKLVIKDLSGSLWGLSPTEEKDTYELPQWHKVLNPGSECIFVYVQGGPQAKVSIKSLH* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0231 639 SMART CBM49_2 547 627 IPR019028 GO:0030246
Gso12g0231 639 Gene3D - 25 494 IPR012341 GO:0005975
Gso12g0231 639 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 389 415 IPR018221 -
Gso12g0231 639 SUPERFAMILY Six-hairpin glycosidases 25 497 IPR008928 GO:0005975
Gso12g0231 639 Pfam Glycosyl hydrolase family 9 28 486 IPR001701 GO:0004553|GO:0005975
Gso12g0231 639 Pfam Carbohydrate binding domain CBM49 548 626 IPR019028 GO:0030246
Gso12g0231 639 PANTHER ENDOGLUCANASE 5 10 594 - -
Gso12g0231 639 PANTHER ENDO-1,4-BETA-GLUCANASE 10 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0231 Gso-Chr12 1959460 1964047 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso12g0231 26 637 Glycoside Hydrolase AT1G48930 67.647 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0231 K01179 - gmx:100802420 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0231 12 1959460 1964047 Gso11g0860 11 7680216 7684821 GST