Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0224 ATGAGAGGCGTTGTGAAAGCGTTTGCGAGGAATCTGTTGTTCCATGGAACGAACACTGAATGCAGTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGGCCCATCTCCGACGACACCGCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCATCTCCGCAGGGCTTGCTATCTATGATACGATGCAGTATATTCGGTCTCCGGTCAATACAATATGTATGGGTCAAGCTGCATCCATGGGTTCTCTTCTATTGGCGGCGGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCGACAATCATGATTCACCAGCCTTCTGGTGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATTGTTCGGGTTTGGGATTCTTTAAATGAGTTGTATTCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGAGATAACTTTATGACTCCACAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGGTTATTGATCAGAGACCTATGGCTTTGGTTTCTGATGCTGTTGGTAACGAAGGCAAAGATAAAGGTTCCAATTAG 711 0.4937 MRGVVKAFARNLLFHGTNTECSRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAISAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYSKHTGQSVEVIQTNMDRDNFMTPQEAKEFGLIDEVIDQRPMALVSDAVGNEGKDKGSN* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0224 236 ProSitePatterns Endopeptidase Clp histidine active site. 136 149 IPR033135 -
Gso12g0224 236 CDD S14_ClpP_2 43 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 Pfam Clp protease 37 216 IPR023562 -
Gso12g0224 236 Gene3D - 17 222 - -
Gso12g0224 236 PRINTS Clp protease catalytic subunit P signature 43 58 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PRINTS Clp protease catalytic subunit P signature 83 103 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PRINTS Clp protease catalytic subunit P signature 114 131 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PRINTS Clp protease catalytic subunit P signature 135 154 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PRINTS Clp protease catalytic subunit P signature 192 211 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 235 IPR023562 -
Gso12g0224 236 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 27 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso12g0224 236 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 235 - -
Gso12g0224 236 ProSitePatterns Endopeptidase Clp serine active site. 114 125 IPR018215 -
Gso12g0224 236 SUPERFAMILY ClpP/crotonase 35 218 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0224 Gso-Chr12 1901059 1905873 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0224 K01358 - gmx:100791303 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0224 12 1901059 1905873 Gso11g0853 11 7628796 7630421 GST