Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0853 ATGAGAGGGGTCGTGAAAGCGTTTGCGGGGAATCTGTTGTTCCATGGAAGAAAGACTCAGACTCAGTGCATTCGCTCCTACAGTCTGATCCCAATGGTGATAGAGCACTCTTCCCGAGGTGAGAGGGCATACGACATCTTCTCGCGCCTTCTGAAGGAGCGCATTATCTGCATCAACGGACCCATCTCCGACGACACTGCCCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAATCCTTCCAAACCCATCAACATGTACCTCAATTCCCCCGGTGGCGCCGTCACCGCAGGGCTTGCTATTTATGATACGATGCAGTATATCCGGTCTCCAGTCAATACAATCTGTATGGGTCAAGCCGCATCCATGGGTTCTCTCCTTTTGGCTGCAGGTGCCAAGGGGGAGAGGCGGTCTCTTCCAAATGCAACAATCATGATTCACCAGCCTTCTGGCGGTTATAGTGGCCAGGCAAAGGATATTGCAATTCACACCAAGCACATAGTTCGGGTTTGGGATTCTTTGAATGAGTTGTATGCCAAGCATACGGGCCAGTCGGTTGAGGTTATTCAGACAAATATGGACAGGGATAACTTTATGACTCCAAAGGAGGCCAAAGAGTTTGGGCTCATTGATGAGGTCATTGATCAGAGACCTATGGCTTTGGTTTCTGACGCTGTTGGTAACGAAGGAAAAGATAAAGGTTCCAATTAG 717 0.4979 MRGVVKAFAGNLLFHGRKTQTQCIRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTAHVVVAQLLFLESENPSKPINMYLNSPGGAVTAGLAIYDTMQYIRSPVNTICMGQAASMGSLLLAAGAKGERRSLPNATIMIHQPSGGYSGQAKDIAIHTKHIVRVWDSLNELYAKHTGQSVEVIQTNMDRDNFMTPKEAKEFGLIDEVIDQRPMALVSDAVGNEGKDKGSN* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0853 238 Gene3D - 16 224 - -
Gso11g0853 238 Pfam Clp protease 39 218 IPR023562 -
Gso11g0853 238 CDD S14_ClpP_2 45 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 22 237 IPR023562 -
Gso11g0853 238 PRINTS Clp protease catalytic subunit P signature 45 60 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 PRINTS Clp protease catalytic subunit P signature 85 105 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 PRINTS Clp protease catalytic subunit P signature 116 133 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 PRINTS Clp protease catalytic subunit P signature 137 156 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 PRINTS Clp protease catalytic subunit P signature 194 213 IPR001907 GO:0004176|GO:0004252|GO:0006508
Gso11g0853 238 ProSitePatterns Endopeptidase Clp serine active site. 116 127 IPR018215 -
Gso11g0853 238 SUPERFAMILY ClpP/crotonase 37 220 IPR029045 -
Gso11g0853 238 ProSitePatterns Endopeptidase Clp histidine active site. 138 151 IPR033135 -
Gso11g0853 238 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 22 237 - -
Gso11g0853 238 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 29 219 IPR001907 GO:0004176|GO:0004252|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0853 Gso-Chr11 7628796 7630421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0853 K01358 - gmx:100782585 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0224 12 1901059 1905873 Gso11g0853 11 7628796 7630421 GST